Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CIITAP33076 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CIITAP33076 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC21.46■■□□□ 1.03
CIITAP33076 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
CIITAP33076 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CIITAP33076 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC21.46■■□□□ 1.03
CIITAP33076 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC21.45■■□□□ 1.03
CIITAP33076 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC21.45■■□□□ 1.03
CIITAP33076 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
CIITAP33076 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
CIITAP33076 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC21.45■■□□□ 1.02
CIITAP33076 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
CIITAP33076 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CIITAP33076 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC21.45■■□□□ 1.02
CIITAP33076 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
CIITAP33076 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC21.45■■□□□ 1.02
CIITAP33076 RCN1P1-201ENST00000400413 996 ntBASIC21.45■■□□□ 1.02
CIITAP33076 MIR4674-201ENST00000582457 87 ntBASIC21.45■■□□□ 1.02
CIITAP33076 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC21.45■■□□□ 1.02
CIITAP33076 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.02
CIITAP33076 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
CIITAP33076 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
CIITAP33076 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
CIITAP33076 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CIITAP33076 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC21.44■■□□□ 1.02
CIITAP33076 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CIITAP33076 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.44■■□□□ 1.02
CIITAP33076 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CIITAP33076 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
CIITAP33076 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CIITAP33076 TERF1P1-201ENST00000311003 1181 ntBASIC21.44■■□□□ 1.02
CIITAP33076 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CIITAP33076 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC21.44■■□□□ 1.02
CIITAP33076 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC21.44■■□□□ 1.02
CIITAP33076 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CIITAP33076 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC21.44■■□□□ 1.02
CIITAP33076 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
CIITAP33076 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC21.44■■□□□ 1.02
CIITAP33076 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
CIITAP33076 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
CIITAP33076 PTGES2-AS1-201ENST00000443493 2100 ntBASIC21.44■■□□□ 1.02
CIITAP33076 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CIITAP33076 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CIITAP33076 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CIITAP33076 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CIITAP33076 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC21.43■■□□□ 1.02
CIITAP33076 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CIITAP33076 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC21.43■■□□□ 1.02
CIITAP33076 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CIITAP33076 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CIITAP33076 AL161938.1-201ENST00000569833 2180 ntBASIC21.43■■□□□ 1.02
CIITAP33076 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
CIITAP33076 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CIITAP33076 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CIITAP33076 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
CIITAP33076 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
CIITAP33076 AC005521.1-201ENST00000393351 872 ntBASIC21.43■■□□□ 1.02
CIITAP33076 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC21.43■■□□□ 1.02
CIITAP33076 AC010203.1-204ENST00000548782 407 ntBASIC21.43■■□□□ 1.02
CIITAP33076 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CIITAP33076 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC21.43■■□□□ 1.02
CIITAP33076 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CIITAP33076 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
CIITAP33076 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CIITAP33076 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CIITAP33076 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC21.43■■□□□ 1.02
CIITAP33076 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CIITAP33076 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CIITAP33076 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
CIITAP33076 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CIITAP33076 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CIITAP33076 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CIITAP33076 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CIITAP33076 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CIITAP33076 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CIITAP33076 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CIITAP33076 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CIITAP33076 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC21.42■■□□□ 1.02
CIITAP33076 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC21.42■■□□□ 1.02
CIITAP33076 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CIITAP33076 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC21.42■■□□□ 1.02
CIITAP33076 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC21.42■■□□□ 1.02
CIITAP33076 AL138966.2-201ENST00000621997 464 ntBASIC21.42■■□□□ 1.02
CIITAP33076 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CIITAP33076 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
CIITAP33076 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC21.42■■□□□ 1.02
CIITAP33076 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC21.42■■□□□ 1.02
CIITAP33076 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CIITAP33076 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CIITAP33076 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC21.41■■□□□ 1.02
CIITAP33076 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CIITAP33076 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CIITAP33076 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
CIITAP33076 PHB2-202ENST00000440277 996 ntTSL 5 BASIC21.41■■□□□ 1.02
CIITAP33076 FAM210CP-201ENST00000445714 574 ntBASIC21.41■■□□□ 1.02
CIITAP33076 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC21.41■■□□□ 1.02
CIITAP33076 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CIITAP33076 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC21.41■■□□□ 1.02
CIITAP33076 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CIITAP33076 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms