Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HOXA9P31269 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC19.83■□□□□ 0.77
HOXA9P31269 MCCD1P1-208ENST00000445732 328 ntBASIC19.83■□□□□ 0.77
HOXA9P31269 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
HOXA9P31269 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.83■□□□□ 0.77
HOXA9P31269 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.83■□□□□ 0.76
HOXA9P31269 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HOXA9P31269 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HOXA9P31269 AC036111.1-201ENST00000533973 1582 ntBASIC19.83■□□□□ 0.76
HOXA9P31269 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HOXA9P31269 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.82■□□□□ 0.76
HOXA9P31269 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HOXA9P31269 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
HOXA9P31269 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HOXA9P31269 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HOXA9P31269 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.82■□□□□ 0.76
HOXA9P31269 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
HOXA9P31269 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
HOXA9P31269 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
HOXA9P31269 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.82■□□□□ 0.76
HOXA9P31269 AC092597.1-201ENST00000487352 616 ntBASIC19.82■□□□□ 0.76
HOXA9P31269 PP7080-204ENST00000510714 601 ntTSL 3 BASIC19.82■□□□□ 0.76
HOXA9P31269 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
HOXA9P31269 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC19.82■□□□□ 0.76
HOXA9P31269 WDR88-203ENST00000592765 651 ntTSL 5 BASIC19.82■□□□□ 0.76
HOXA9P31269 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HOXA9P31269 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.82■□□□□ 0.76
HOXA9P31269 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
HOXA9P31269 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HOXA9P31269 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HOXA9P31269 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HOXA9P31269 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HOXA9P31269 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.81■□□□□ 0.76
HOXA9P31269 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
HOXA9P31269 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HOXA9P31269 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
HOXA9P31269 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC19.81■□□□□ 0.76
HOXA9P31269 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HOXA9P31269 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC19.81■□□□□ 0.76
HOXA9P31269 AC024243.1-201ENST00000609234 778 ntBASIC19.81■□□□□ 0.76
HOXA9P31269 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HOXA9P31269 AL691432.3-201ENST00000621860 400 ntBASIC19.81■□□□□ 0.76
HOXA9P31269 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
HOXA9P31269 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HOXA9P31269 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC19.81■□□□□ 0.76
HOXA9P31269 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC19.81■□□□□ 0.76
HOXA9P31269 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
HOXA9P31269 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HOXA9P31269 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.81■□□□□ 0.76
HOXA9P31269 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HOXA9P31269 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXA9P31269 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.8■□□□□ 0.76
HOXA9P31269 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXA9P31269 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXA9P31269 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXA9P31269 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXA9P31269 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXA9P31269 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXA9P31269 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXA9P31269 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXA9P31269 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXA9P31269 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXA9P31269 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HOXA9P31269 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXA9P31269 TPM4P1-201ENST00000436100 807 ntBASIC19.8■□□□□ 0.76
HOXA9P31269 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC19.8■□□□□ 0.76
HOXA9P31269 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXA9P31269 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.8■□□□□ 0.76
HOXA9P31269 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXA9P31269 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC19.8■□□□□ 0.76
HOXA9P31269 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
HOXA9P31269 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.8■□□□□ 0.76
HOXA9P31269 LINC01521-201ENST00000504184 1943 ntBASIC19.8■□□□□ 0.76
HOXA9P31269 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXA9P31269 AC092667.1-201ENST00000434301 2586 ntBASIC19.8■□□□□ 0.76
HOXA9P31269 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
HOXA9P31269 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXA9P31269 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
HOXA9P31269 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
HOXA9P31269 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.79■□□□□ 0.76
HOXA9P31269 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.79■□□□□ 0.76
HOXA9P31269 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HOXA9P31269 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXA9P31269 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXA9P31269 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC19.79■□□□□ 0.76
HOXA9P31269 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC19.79■□□□□ 0.76
HOXA9P31269 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC19.79■□□□□ 0.76
HOXA9P31269 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC19.79■□□□□ 0.76
HOXA9P31269 SEC1P-202ENST00000473944 940 ntBASIC19.79■□□□□ 0.76
HOXA9P31269 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.79■□□□□ 0.76
HOXA9P31269 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.79■□□□□ 0.76
HOXA9P31269 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HOXA9P31269 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXA9P31269 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
HOXA9P31269 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HOXA9P31269 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.79■□□□□ 0.76
HOXA9P31269 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXA9P31269 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.78■□□□□ 0.76
HOXA9P31269 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXA9P31269 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms