Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 NME1-207ENST00000480143 964 ntTSL 2 BASIC14.51□□□□□ -0.09
HLA-DMBP28068 AC026366.1-201ENST00000488803 879 ntBASIC14.51□□□□□ -0.09
HLA-DMBP28068 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC14.51□□□□□ -0.09
HLA-DMBP28068 KRT18P16-201ENST00000510337 1294 ntBASIC14.51□□□□□ -0.09
HLA-DMBP28068 ADM-205ENST00000528544 586 ntTSL 2 BASIC14.51□□□□□ -0.09
HLA-DMBP28068 AP003097.1-201ENST00000530657 1135 ntBASIC14.51□□□□□ -0.09
HLA-DMBP28068 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
HLA-DMBP28068 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
HLA-DMBP28068 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC14.51□□□□□ -0.09
HLA-DMBP28068 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HLA-DMBP28068 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC14.51□□□□□ -0.09
HLA-DMBP28068 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HLA-DMBP28068 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HLA-DMBP28068 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC14.51□□□□□ -0.09
HLA-DMBP28068 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HLA-DMBP28068 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HLA-DMBP28068 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC14.51□□□□□ -0.09
HLA-DMBP28068 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
HLA-DMBP28068 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HLA-DMBP28068 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HLA-DMBP28068 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC14.51□□□□□ -0.09
HLA-DMBP28068 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
HLA-DMBP28068 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
HLA-DMBP28068 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
HLA-DMBP28068 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HLA-DMBP28068 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
HLA-DMBP28068 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HLA-DMBP28068 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HLA-DMBP28068 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HLA-DMBP28068 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HLA-DMBP28068 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HLA-DMBP28068 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
HLA-DMBP28068 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC14.5□□□□□ -0.09
HLA-DMBP28068 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
HLA-DMBP28068 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
HLA-DMBP28068 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC14.5□□□□□ -0.09
HLA-DMBP28068 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HLA-DMBP28068 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC14.5□□□□□ -0.09
HLA-DMBP28068 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
HLA-DMBP28068 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC14.5□□□□□ -0.09
HLA-DMBP28068 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HLA-DMBP28068 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC14.5□□□□□ -0.09
HLA-DMBP28068 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC14.5□□□□□ -0.09
HLA-DMBP28068 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC14.5□□□□□ -0.09
HLA-DMBP28068 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC14.5□□□□□ -0.09
HLA-DMBP28068 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
HLA-DMBP28068 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC14.5□□□□□ -0.09
HLA-DMBP28068 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
HLA-DMBP28068 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HLA-DMBP28068 ADK-206ENST00000541550 2222 ntTSL 2 BASIC14.5□□□□□ -0.09
HLA-DMBP28068 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HLA-DMBP28068 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HLA-DMBP28068 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HLA-DMBP28068 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HLA-DMBP28068 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
HLA-DMBP28068 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HLA-DMBP28068 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HLA-DMBP28068 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HLA-DMBP28068 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HLA-DMBP28068 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HLA-DMBP28068 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
HLA-DMBP28068 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HLA-DMBP28068 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC14.49□□□□□ -0.09
HLA-DMBP28068 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HLA-DMBP28068 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HLA-DMBP28068 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
HLA-DMBP28068 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC14.49□□□□□ -0.09
HLA-DMBP28068 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
HLA-DMBP28068 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC14.49□□□□□ -0.09
HLA-DMBP28068 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC14.49□□□□□ -0.09
HLA-DMBP28068 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
HLA-DMBP28068 PRORSD1P-201ENST00000295112 541 ntBASIC14.49□□□□□ -0.09
HLA-DMBP28068 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
HLA-DMBP28068 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HLA-DMBP28068 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC14.49□□□□□ -0.09
HLA-DMBP28068 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC14.49□□□□□ -0.09
HLA-DMBP28068 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC14.49□□□□□ -0.09
HLA-DMBP28068 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC14.49□□□□□ -0.09
HLA-DMBP28068 THEM4-205ENST00000489410 643 ntTSL 2 BASIC14.49□□□□□ -0.09
HLA-DMBP28068 MAX-217ENST00000557277 728 ntTSL 3 BASIC14.49□□□□□ -0.09
HLA-DMBP28068 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC14.49□□□□□ -0.09
HLA-DMBP28068 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC14.49□□□□□ -0.09
HLA-DMBP28068 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HLA-DMBP28068 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC14.49□□□□□ -0.09
HLA-DMBP28068 AL121829.2-201ENST00000620908 328 ntBASIC14.49□□□□□ -0.09
HLA-DMBP28068 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC14.49□□□□□ -0.09
HLA-DMBP28068 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HLA-DMBP28068 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC14.49□□□□□ -0.09
HLA-DMBP28068 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HLA-DMBP28068 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HLA-DMBP28068 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
HLA-DMBP28068 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC14.49□□□□□ -0.09
HLA-DMBP28068 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
HLA-DMBP28068 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC14.49□□□□□ -0.09
HLA-DMBP28068 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HLA-DMBP28068 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC14.49□□□□□ -0.09
HLA-DMBP28068 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
HLA-DMBP28068 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms