Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC19.72■□□□□ 0.75
VCANP13611 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.72■□□□□ 0.75
VCANP13611 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
VCANP13611 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC19.72■□□□□ 0.75
VCANP13611 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VCANP13611 DNAJB3-201ENST00000446806 729 ntBASIC19.71■□□□□ 0.75
VCANP13611 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VCANP13611 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VCANP13611 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VCANP13611 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
VCANP13611 HLA-V-201ENST00000429037 534 ntBASIC19.71■□□□□ 0.75
VCANP13611 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC19.71■□□□□ 0.75
VCANP13611 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC19.71■□□□□ 0.75
VCANP13611 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VCANP13611 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC19.71■□□□□ 0.75
VCANP13611 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
VCANP13611 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VCANP13611 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC19.71■□□□□ 0.75
VCANP13611 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC19.7■□□□□ 0.74
VCANP13611 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC19.7■□□□□ 0.74
VCANP13611 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19.7■□□□□ 0.74
VCANP13611 SCARNA2-201ENST00000458748 420 ntBASIC19.7■□□□□ 0.74
VCANP13611 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC19.7■□□□□ 0.74
VCANP13611 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VCANP13611 AL356488.2-201ENST00000602755 427 ntBASIC19.7■□□□□ 0.74
VCANP13611 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VCANP13611 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
VCANP13611 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VCANP13611 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VCANP13611 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC19.7■□□□□ 0.74
VCANP13611 AC106028.4-201ENST00000614509 607 ntBASIC19.7■□□□□ 0.74
VCANP13611 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VCANP13611 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VCANP13611 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VCANP13611 WDR53-203ENST00000429115 683 ntTSL 2 BASIC19.7■□□□□ 0.74
VCANP13611 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VCANP13611 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
VCANP13611 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.69■□□□□ 0.74
VCANP13611 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC19.69■□□□□ 0.74
VCANP13611 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VCANP13611 AC145285.3-201ENST00000564603 959 ntBASIC19.69■□□□□ 0.74
VCANP13611 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
VCANP13611 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.69■□□□□ 0.74
VCANP13611 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
VCANP13611 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC19.69■□□□□ 0.74
VCANP13611 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VCANP13611 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
VCANP13611 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VCANP13611 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC19.69■□□□□ 0.74
VCANP13611 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
VCANP13611 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VCANP13611 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VCANP13611 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
VCANP13611 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VCANP13611 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC19.69■□□□□ 0.74
VCANP13611 AC190387.1-201ENST00000551683 408 ntBASIC19.69■□□□□ 0.74
VCANP13611 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC19.69■□□□□ 0.74
VCANP13611 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC19.69■□□□□ 0.74
VCANP13611 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VCANP13611 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.68■□□□□ 0.74
VCANP13611 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.68■□□□□ 0.74
VCANP13611 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VCANP13611 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.68■□□□□ 0.74
VCANP13611 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VCANP13611 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC19.68■□□□□ 0.74
VCANP13611 ATP6V0CP3-201ENST00000417255 467 ntBASIC19.68■□□□□ 0.74
VCANP13611 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC19.68■□□□□ 0.74
VCANP13611 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
VCANP13611 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.68■□□□□ 0.74
VCANP13611 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VCANP13611 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
VCANP13611 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
VCANP13611 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.68■□□□□ 0.74
VCANP13611 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VCANP13611 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.68■□□□□ 0.74
VCANP13611 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VCANP13611 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
VCANP13611 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
VCANP13611 CDV3-207ENST00000508481 661 ntTSL 3 BASIC19.67■□□□□ 0.74
VCANP13611 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC19.67■□□□□ 0.74
VCANP13611 GREM1-201ENST00000560677 623 ntTSL 4 BASIC19.67■□□□□ 0.74
VCANP13611 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
VCANP13611 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
VCANP13611 NSUN5P1-202ENST00000421140 1535 ntBASIC19.67■□□□□ 0.74
VCANP13611 NSUN5P2-203ENST00000457352 1529 ntBASIC19.67■□□□□ 0.74
VCANP13611 COPE-202ENST00000349893 948 ntTSL 2 BASIC19.67■□□□□ 0.74
VCANP13611 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.67■□□□□ 0.74
VCANP13611 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VCANP13611 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VCANP13611 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC19.67■□□□□ 0.74
VCANP13611 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
VCANP13611 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.67■□□□□ 0.74
VCANP13611 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VCANP13611 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VCANP13611 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
VCANP13611 BCRP1-201ENST00000444246 691 ntBASIC19.67■□□□□ 0.74
VCANP13611 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC19.67■□□□□ 0.74
VCANP13611 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
VCANP13611 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
VCANP13611 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms