Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 MEIS3P1-201ENST00000495167 958 ntBASIC19.9■□□□□ 0.78
COL6A3P12111 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL6A3P12111 IRF8-202ENST00000562492 946 ntTSL 3 BASIC19.9■□□□□ 0.78
COL6A3P12111 AL606495.2-201ENST00000605867 535 ntBASIC19.9■□□□□ 0.78
COL6A3P12111 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL6A3P12111 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.9■□□□□ 0.78
COL6A3P12111 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL6A3P12111 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL6A3P12111 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
COL6A3P12111 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC19.89■□□□□ 0.78
COL6A3P12111 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC19.89■□□□□ 0.78
COL6A3P12111 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC19.89■□□□□ 0.78
COL6A3P12111 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC19.89■□□□□ 0.78
COL6A3P12111 AP001269.4-201ENST00000609611 512 ntBASIC19.89■□□□□ 0.78
COL6A3P12111 AL592071.1-201ENST00000611956 408 ntBASIC19.89■□□□□ 0.78
COL6A3P12111 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.89■□□□□ 0.78
COL6A3P12111 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.89■□□□□ 0.78
COL6A3P12111 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.78
COL6A3P12111 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
COL6A3P12111 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC19.89■□□□□ 0.77
COL6A3P12111 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC19.89■□□□□ 0.77
COL6A3P12111 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19.89■□□□□ 0.77
COL6A3P12111 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
COL6A3P12111 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
COL6A3P12111 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL6A3P12111 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
COL6A3P12111 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.89■□□□□ 0.77
COL6A3P12111 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL6A3P12111 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL6A3P12111 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC19.89■□□□□ 0.77
COL6A3P12111 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
COL6A3P12111 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL6A3P12111 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC19.89■□□□□ 0.77
COL6A3P12111 AP002472.1-201ENST00000577490 586 ntBASIC19.89■□□□□ 0.77
COL6A3P12111 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC19.89■□□□□ 0.77
COL6A3P12111 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
COL6A3P12111 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.88■□□□□ 0.77
COL6A3P12111 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL6A3P12111 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC19.88■□□□□ 0.77
COL6A3P12111 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL6A3P12111 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL6A3P12111 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL6A3P12111 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL6A3P12111 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.88■□□□□ 0.77
COL6A3P12111 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL6A3P12111 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL6A3P12111 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC19.88■□□□□ 0.77
COL6A3P12111 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL6A3P12111 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
COL6A3P12111 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL6A3P12111 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL6A3P12111 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL6A3P12111 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.87■□□□□ 0.77
COL6A3P12111 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC19.87■□□□□ 0.77
COL6A3P12111 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19.87■□□□□ 0.77
COL6A3P12111 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC19.87■□□□□ 0.77
COL6A3P12111 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC19.87■□□□□ 0.77
COL6A3P12111 AL160286.2-201ENST00000567150 934 ntBASIC19.87■□□□□ 0.77
COL6A3P12111 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL6A3P12111 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL6A3P12111 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.87■□□□□ 0.77
COL6A3P12111 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL6A3P12111 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC19.87■□□□□ 0.77
COL6A3P12111 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC19.87■□□□□ 0.77
COL6A3P12111 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL6A3P12111 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL6A3P12111 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC19.87■□□□□ 0.77
COL6A3P12111 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
COL6A3P12111 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL6A3P12111 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL6A3P12111 GAPDHP21-201ENST00000450301 1010 ntBASIC19.87■□□□□ 0.77
COL6A3P12111 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.87■□□□□ 0.77
COL6A3P12111 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
COL6A3P12111 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC19.87■□□□□ 0.77
COL6A3P12111 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL6A3P12111 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC19.86■□□□□ 0.77
COL6A3P12111 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
COL6A3P12111 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL6A3P12111 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC19.86■□□□□ 0.77
COL6A3P12111 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL6A3P12111 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL6A3P12111 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL6A3P12111 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
COL6A3P12111 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL6A3P12111 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL6A3P12111 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
COL6A3P12111 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
COL6A3P12111 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL6A3P12111 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL6A3P12111 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
COL6A3P12111 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
COL6A3P12111 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC19.86■□□□□ 0.77
COL6A3P12111 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC19.86■□□□□ 0.77
COL6A3P12111 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC19.86■□□□□ 0.77
COL6A3P12111 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.86■□□□□ 0.77
COL6A3P12111 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL6A3P12111 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL6A3P12111 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC19.86■□□□□ 0.77
COL6A3P12111 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL6A3P12111 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms