Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.13■□□□□ 0.65
VIMP08670 NALT1-201ENST00000429224 738 ntTSL 5 BASIC19.13■□□□□ 0.65
VIMP08670 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VIMP08670 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.13■□□□□ 0.65
VIMP08670 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.13■□□□□ 0.65
VIMP08670 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.13■□□□□ 0.65
VIMP08670 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VIMP08670 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VIMP08670 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
VIMP08670 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VIMP08670 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VIMP08670 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
VIMP08670 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.13■□□□□ 0.65
VIMP08670 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VIMP08670 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
VIMP08670 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC19.13■□□□□ 0.65
VIMP08670 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
VIMP08670 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VIMP08670 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC19.13■□□□□ 0.65
VIMP08670 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VIMP08670 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VIMP08670 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VIMP08670 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
VIMP08670 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VIMP08670 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC19.12■□□□□ 0.65
VIMP08670 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC19.12■□□□□ 0.65
VIMP08670 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
VIMP08670 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
VIMP08670 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VIMP08670 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
VIMP08670 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VIMP08670 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.12■□□□□ 0.65
VIMP08670 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
VIMP08670 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
VIMP08670 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VIMP08670 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC19.12■□□□□ 0.65
VIMP08670 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VIMP08670 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VIMP08670 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VIMP08670 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VIMP08670 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VIMP08670 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.12■□□□□ 0.65
VIMP08670 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VIMP08670 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC19.11■□□□□ 0.65
VIMP08670 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
VIMP08670 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
VIMP08670 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VIMP08670 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC19.11■□□□□ 0.65
VIMP08670 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.11■□□□□ 0.65
VIMP08670 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
VIMP08670 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC19.11■□□□□ 0.65
VIMP08670 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VIMP08670 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
VIMP08670 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VIMP08670 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
VIMP08670 GATB-213ENST00000515812 1893 ntTSL 5 BASIC19.11■□□□□ 0.65
VIMP08670 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
VIMP08670 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VIMP08670 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
VIMP08670 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC19.11■□□□□ 0.65
VIMP08670 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VIMP08670 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VIMP08670 AC018553.1-201ENST00000616682 1458 ntBASIC19.1■□□□□ 0.65
VIMP08670 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VIMP08670 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VIMP08670 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VIMP08670 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VIMP08670 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC19.1■□□□□ 0.65
VIMP08670 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VIMP08670 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
VIMP08670 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
VIMP08670 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VIMP08670 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VIMP08670 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.1■□□□□ 0.65
VIMP08670 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
VIMP08670 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.1■□□□□ 0.65
VIMP08670 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC19.1■□□□□ 0.65
VIMP08670 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
VIMP08670 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
VIMP08670 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC19.1■□□□□ 0.65
VIMP08670 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VIMP08670 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC19.1■□□□□ 0.65
VIMP08670 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VIMP08670 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC19.1■□□□□ 0.65
VIMP08670 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VIMP08670 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC19.1■□□□□ 0.65
VIMP08670 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VIMP08670 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
VIMP08670 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VIMP08670 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC19.1■□□□□ 0.65
VIMP08670 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VIMP08670 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.1■□□□□ 0.65
VIMP08670 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
VIMP08670 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VIMP08670 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
VIMP08670 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VIMP08670 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VIMP08670 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.09■□□□□ 0.65
VIMP08670 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
VIMP08670 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms