Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SEMA3DO95025 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SEMA3DO95025 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
SEMA3DO95025 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SEMA3DO95025 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SEMA3DO95025 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SEMA3DO95025 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SEMA3DO95025 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SEMA3DO95025 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
SEMA3DO95025 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SEMA3DO95025 PRORSD1P-201ENST00000295112 541 ntBASIC18.24■□□□□ 0.51
SEMA3DO95025 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SEMA3DO95025 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SEMA3DO95025 AC004980.1-204ENST00000429707 299 ntBASIC18.24■□□□□ 0.51
SEMA3DO95025 TSPY23P-201ENST00000440136 739 ntBASIC18.24■□□□□ 0.51
SEMA3DO95025 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.24■□□□□ 0.51
SEMA3DO95025 AC026271.3-201ENST00000571884 352 ntBASIC18.24■□□□□ 0.51
SEMA3DO95025 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.24■□□□□ 0.51
SEMA3DO95025 FAM197Y4-202ENST00000622692 608 ntBASIC18.24■□□□□ 0.51
SEMA3DO95025 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.24■□□□□ 0.51
SEMA3DO95025 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SEMA3DO95025 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.24■□□□□ 0.51
SEMA3DO95025 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
SEMA3DO95025 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SEMA3DO95025 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SEMA3DO95025 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.24■□□□□ 0.51
SEMA3DO95025 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SEMA3DO95025 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SEMA3DO95025 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SEMA3DO95025 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.24■□□□□ 0.51
SEMA3DO95025 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SEMA3DO95025 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.24■□□□□ 0.51
SEMA3DO95025 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SEMA3DO95025 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SEMA3DO95025 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SEMA3DO95025 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SEMA3DO95025 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SEMA3DO95025 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SEMA3DO95025 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.23■□□□□ 0.51
SEMA3DO95025 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.23■□□□□ 0.51
SEMA3DO95025 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SEMA3DO95025 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SEMA3DO95025 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SEMA3DO95025 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SEMA3DO95025 PPP1R14BP5-201ENST00000440334 435 ntBASIC18.23■□□□□ 0.51
SEMA3DO95025 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SEMA3DO95025 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.23■□□□□ 0.51
SEMA3DO95025 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.23■□□□□ 0.51
SEMA3DO95025 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.23■□□□□ 0.51
SEMA3DO95025 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SEMA3DO95025 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
SEMA3DO95025 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.23■□□□□ 0.51
SEMA3DO95025 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SEMA3DO95025 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
SEMA3DO95025 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SEMA3DO95025 KRT16P1-201ENST00000399124 1418 ntBASIC18.23■□□□□ 0.51
SEMA3DO95025 AL135905.2-201ENST00000584934 1404 ntBASIC18.23■□□□□ 0.51
SEMA3DO95025 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SEMA3DO95025 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SEMA3DO95025 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.22■□□□□ 0.51
SEMA3DO95025 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.22■□□□□ 0.51
SEMA3DO95025 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.22■□□□□ 0.51
SEMA3DO95025 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
SEMA3DO95025 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SEMA3DO95025 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SEMA3DO95025 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SEMA3DO95025 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SEMA3DO95025 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SEMA3DO95025 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SEMA3DO95025 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SEMA3DO95025 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.22■□□□□ 0.51
SEMA3DO95025 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SEMA3DO95025 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC18.22■□□□□ 0.51
SEMA3DO95025 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.22■□□□□ 0.51
SEMA3DO95025 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.22■□□□□ 0.51
SEMA3DO95025 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
SEMA3DO95025 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.22■□□□□ 0.51
SEMA3DO95025 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC18.22■□□□□ 0.51
SEMA3DO95025 AF186192.3-201ENST00000583427 947 ntBASIC18.22■□□□□ 0.51
SEMA3DO95025 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.22■□□□□ 0.51
SEMA3DO95025 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
SEMA3DO95025 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC18.22■□□□□ 0.51
SEMA3DO95025 AC073195.1-201ENST00000607241 877 ntBASIC18.22■□□□□ 0.51
SEMA3DO95025 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.22■□□□□ 0.51
SEMA3DO95025 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SEMA3DO95025 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SEMA3DO95025 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SEMA3DO95025 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
SEMA3DO95025 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SEMA3DO95025 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
SEMA3DO95025 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.22■□□□□ 0.51
SEMA3DO95025 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SEMA3DO95025 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.22■□□□□ 0.51
SEMA3DO95025 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SEMA3DO95025 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SEMA3DO95025 AL049812.1-201ENST00000432563 2267 ntBASIC18.21■□□□□ 0.51
SEMA3DO95025 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SEMA3DO95025 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SEMA3DO95025 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SEMA3DO95025 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms