Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SHOX2O60902 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
SHOX2O60902 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
SHOX2O60902 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
SHOX2O60902 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC19.09■□□□□ 0.65
SHOX2O60902 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHOX2O60902 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHOX2O60902 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
SHOX2O60902 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHOX2O60902 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SHOX2O60902 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SHOX2O60902 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC19.09■□□□□ 0.65
SHOX2O60902 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.09■□□□□ 0.65
SHOX2O60902 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.08■□□□□ 0.65
SHOX2O60902 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SHOX2O60902 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SHOX2O60902 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SHOX2O60902 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
SHOX2O60902 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
SHOX2O60902 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
SHOX2O60902 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
SHOX2O60902 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.08■□□□□ 0.65
SHOX2O60902 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SHOX2O60902 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SHOX2O60902 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC19.08■□□□□ 0.65
SHOX2O60902 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.65
SHOX2O60902 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19.08■□□□□ 0.64
SHOX2O60902 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
SHOX2O60902 AL136967.2-201ENST00000623968 743 ntBASIC19.08■□□□□ 0.64
SHOX2O60902 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
SHOX2O60902 AC011676.5-201ENST00000624864 2660 ntBASIC19.08■□□□□ 0.64
SHOX2O60902 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
SHOX2O60902 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
SHOX2O60902 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SHOX2O60902 PP12613-201ENST00000424958 2230 ntBASIC19.08■□□□□ 0.64
SHOX2O60902 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.64
SHOX2O60902 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SHOX2O60902 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHOX2O60902 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHOX2O60902 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHOX2O60902 MPST-204ENST00000404393 1329 ntTSL 5 BASIC19.07■□□□□ 0.64
SHOX2O60902 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
SHOX2O60902 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHOX2O60902 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHOX2O60902 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHOX2O60902 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHOX2O60902 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SHOX2O60902 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.07■□□□□ 0.64
SHOX2O60902 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHOX2O60902 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SHOX2O60902 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC19.07■□□□□ 0.64
SHOX2O60902 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SHOX2O60902 AL031432.3-201ENST00000607698 485 ntBASIC19.07■□□□□ 0.64
SHOX2O60902 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC19.07■□□□□ 0.64
SHOX2O60902 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC19.07■□□□□ 0.64
SHOX2O60902 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
SHOX2O60902 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SHOX2O60902 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHOX2O60902 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHOX2O60902 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHOX2O60902 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC19.07■□□□□ 0.64
SHOX2O60902 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHOX2O60902 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC19.07■□□□□ 0.64
SHOX2O60902 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
SHOX2O60902 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHOX2O60902 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC19.06■□□□□ 0.64
SHOX2O60902 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
SHOX2O60902 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHOX2O60902 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHOX2O60902 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC19.06■□□□□ 0.64
SHOX2O60902 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SHOX2O60902 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHOX2O60902 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHOX2O60902 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
SHOX2O60902 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
SHOX2O60902 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
SHOX2O60902 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
SHOX2O60902 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHOX2O60902 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC19.06■□□□□ 0.64
SHOX2O60902 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.06■□□□□ 0.64
SHOX2O60902 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC19.06■□□□□ 0.64
SHOX2O60902 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHOX2O60902 AC091305.1-201ENST00000479476 895 ntBASIC19.06■□□□□ 0.64
SHOX2O60902 DUX4L2-201ENST00000561772 1275 ntBASIC19.06■□□□□ 0.64
SHOX2O60902 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC19.06■□□□□ 0.64
SHOX2O60902 CCDC92B-201ENST00000575506 885 ntBASIC19.06■□□□□ 0.64
SHOX2O60902 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.06■□□□□ 0.64
SHOX2O60902 DUX4L6-201ENST00000626483 1275 ntBASIC19.06■□□□□ 0.64
SHOX2O60902 DUX4L1-201ENST00000627662 1275 ntBASIC19.06■□□□□ 0.64
SHOX2O60902 DUX4L8-201ENST00000629013 1275 ntBASIC19.06■□□□□ 0.64
SHOX2O60902 DUX4L3-201ENST00000630187 1275 ntBASIC19.06■□□□□ 0.64
SHOX2O60902 DUX4L7-201ENST00000630678 1275 ntBASIC19.06■□□□□ 0.64
SHOX2O60902 DUX4L5-201ENST00000630834 1275 ntBASIC19.06■□□□□ 0.64
SHOX2O60902 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHOX2O60902 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.06■□□□□ 0.64
SHOX2O60902 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHOX2O60902 AC011270.2-201ENST00000624293 2550 ntBASIC19.06■□□□□ 0.64
SHOX2O60902 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SHOX2O60902 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SHOX2O60902 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms