Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH4O15457 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.4■■□□□ 1.02
MSH4O15457 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
MSH4O15457 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC21.39■■□□□ 1.02
MSH4O15457 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC21.39■■□□□ 1.02
MSH4O15457 KRT8P3-201ENST00000519669 1449 ntBASIC21.39■■□□□ 1.02
MSH4O15457 AC073508.3-201ENST00000619697 1419 ntBASIC21.39■■□□□ 1.02
MSH4O15457 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.02
MSH4O15457 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
MSH4O15457 AL161938.1-201ENST00000569833 2180 ntBASIC21.39■■□□□ 1.01
MSH4O15457 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
MSH4O15457 TERF1P1-201ENST00000311003 1181 ntBASIC21.39■■□□□ 1.01
MSH4O15457 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
MSH4O15457 AC005521.1-201ENST00000393351 872 ntBASIC21.39■■□□□ 1.01
MSH4O15457 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
MSH4O15457 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC21.39■■□□□ 1.01
MSH4O15457 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC21.39■■□□□ 1.01
MSH4O15457 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC21.39■■□□□ 1.01
MSH4O15457 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC21.39■■□□□ 1.01
MSH4O15457 AC010203.1-204ENST00000548782 407 ntBASIC21.39■■□□□ 1.01
MSH4O15457 MIR4674-201ENST00000582457 87 ntBASIC21.39■■□□□ 1.01
MSH4O15457 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.01
MSH4O15457 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC21.39■■□□□ 1.01
MSH4O15457 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC21.39■■□□□ 1.01
MSH4O15457 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
MSH4O15457 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
MSH4O15457 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
MSH4O15457 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC21.39■■□□□ 1.01
MSH4O15457 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC21.39■■□□□ 1.01
MSH4O15457 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
MSH4O15457 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH4O15457 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC21.38■■□□□ 1.01
MSH4O15457 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
MSH4O15457 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
MSH4O15457 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH4O15457 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH4O15457 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
MSH4O15457 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH4O15457 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
MSH4O15457 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
MSH4O15457 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH4O15457 AL049812.1-201ENST00000432563 2267 ntBASIC21.38■■□□□ 1.01
MSH4O15457 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH4O15457 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH4O15457 HMGA1P5-201ENST00000412453 271 ntBASIC21.38■■□□□ 1.01
MSH4O15457 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC21.38■■□□□ 1.01
MSH4O15457 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC21.38■■□□□ 1.01
MSH4O15457 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC21.38■■□□□ 1.01
MSH4O15457 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC21.38■■□□□ 1.01
MSH4O15457 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH4O15457 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
MSH4O15457 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC21.38■■□□□ 1.01
MSH4O15457 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
MSH4O15457 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH4O15457 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH4O15457 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH4O15457 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC21.37■■□□□ 1.01
MSH4O15457 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
MSH4O15457 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC21.37■■□□□ 1.01
MSH4O15457 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC21.37■■□□□ 1.01
MSH4O15457 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC21.37■■□□□ 1.01
MSH4O15457 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
MSH4O15457 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH4O15457 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC21.37■■□□□ 1.01
MSH4O15457 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
MSH4O15457 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH4O15457 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH4O15457 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC21.37■■□□□ 1.01
MSH4O15457 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
MSH4O15457 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC21.36■■□□□ 1.01
MSH4O15457 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC21.36■■□□□ 1.01
MSH4O15457 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH4O15457 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC21.36■■□□□ 1.01
MSH4O15457 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH4O15457 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
MSH4O15457 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
MSH4O15457 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH4O15457 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
MSH4O15457 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH4O15457 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH4O15457 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC21.36■■□□□ 1.01
MSH4O15457 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
MSH4O15457 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
MSH4O15457 GXYLT1P6-201ENST00000456472 1187 ntBASIC21.36■■□□□ 1.01
MSH4O15457 KRT18P21-201ENST00000515767 1272 ntBASIC21.36■■□□□ 1.01
MSH4O15457 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC21.36■■□□□ 1.01
MSH4O15457 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
MSH4O15457 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC21.36■■□□□ 1.01
MSH4O15457 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
MSH4O15457 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
MSH4O15457 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
MSH4O15457 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC21.35■■□□□ 1.01
MSH4O15457 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC21.35■■□□□ 1.01
MSH4O15457 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH4O15457 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH4O15457 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
MSH4O15457 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH4O15457 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC21.35■■□□□ 1.01
MSH4O15457 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
MSH4O15457 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC21.35■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms