Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
HMGN4O00479 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGN4O00479 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.72■□□□□ 0.43
HMGN4O00479 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGN4O00479 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
HMGN4O00479 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
HMGN4O00479 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
HMGN4O00479 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.72■□□□□ 0.43
HMGN4O00479 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC17.72■□□□□ 0.43
HMGN4O00479 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC17.72■□□□□ 0.43
HMGN4O00479 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC17.72■□□□□ 0.43
HMGN4O00479 AC006058.3-201ENST00000606217 1069 ntBASIC17.72■□□□□ 0.43
HMGN4O00479 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.72■□□□□ 0.43
HMGN4O00479 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
HMGN4O00479 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.72■□□□□ 0.43
HMGN4O00479 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
HMGN4O00479 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HMGN4O00479 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGN4O00479 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HMGN4O00479 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGN4O00479 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
HMGN4O00479 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
HMGN4O00479 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGN4O00479 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.71■□□□□ 0.43
HMGN4O00479 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGN4O00479 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGN4O00479 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.71■□□□□ 0.43
HMGN4O00479 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGN4O00479 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGN4O00479 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.71■□□□□ 0.43
HMGN4O00479 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGN4O00479 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HMGN4O00479 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGN4O00479 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGN4O00479 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HMGN4O00479 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC17.71■□□□□ 0.43
HMGN4O00479 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGN4O00479 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HMGN4O00479 GLRB-205ENST00000512619 728 ntTSL 3 BASIC17.71■□□□□ 0.43
HMGN4O00479 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC17.71■□□□□ 0.43
HMGN4O00479 AL445675.2-201ENST00000620291 557 ntBASIC17.71■□□□□ 0.43
HMGN4O00479 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
HMGN4O00479 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGN4O00479 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGN4O00479 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
HMGN4O00479 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGN4O00479 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGN4O00479 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
HMGN4O00479 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
HMGN4O00479 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGN4O00479 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGN4O00479 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGN4O00479 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
HMGN4O00479 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
HMGN4O00479 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.71■□□□□ 0.43
HMGN4O00479 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
HMGN4O00479 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.71■□□□□ 0.42
HMGN4O00479 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGN4O00479 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.7■□□□□ 0.42
HMGN4O00479 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGN4O00479 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGN4O00479 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
HMGN4O00479 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
HMGN4O00479 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGN4O00479 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.7■□□□□ 0.42
HMGN4O00479 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC17.7■□□□□ 0.42
HMGN4O00479 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.7■□□□□ 0.42
HMGN4O00479 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
HMGN4O00479 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HMGN4O00479 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGN4O00479 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGN4O00479 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGN4O00479 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.7■□□□□ 0.42
HMGN4O00479 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC17.7■□□□□ 0.42
HMGN4O00479 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGN4O00479 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC17.7■□□□□ 0.42
HMGN4O00479 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGN4O00479 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC17.7■□□□□ 0.42
HMGN4O00479 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.7■□□□□ 0.42
HMGN4O00479 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGN4O00479 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGN4O00479 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGN4O00479 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGN4O00479 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HMGN4O00479 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGN4O00479 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HMGN4O00479 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGN4O00479 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGN4O00479 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.69■□□□□ 0.42
HMGN4O00479 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.69■□□□□ 0.42
HMGN4O00479 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
HMGN4O00479 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGN4O00479 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HMGN4O00479 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGN4O00479 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HMGN4O00479 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.69■□□□□ 0.42
HMGN4O00479 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HMGN4O00479 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
HMGN4O00479 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC17.69■□□□□ 0.42
HMGN4O00479 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms