Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC17.16■□□□□ 0.34
COL6A6A6NMZ7 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
COL6A6A6NMZ7 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A6A6NMZ7 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC17.15■□□□□ 0.34
COL6A6A6NMZ7 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC17.15■□□□□ 0.34
COL6A6A6NMZ7 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A6A6NMZ7 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.15■□□□□ 0.34
COL6A6A6NMZ7 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
COL6A6A6NMZ7 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A6A6NMZ7 CDV3-207ENST00000508481 661 ntTSL 3 BASIC17.15■□□□□ 0.34
COL6A6A6NMZ7 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A6A6NMZ7 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.15■□□□□ 0.34
COL6A6A6NMZ7 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A6A6NMZ7 FICD-205ENST00000552758 603 ntTSL 2 BASIC17.15■□□□□ 0.34
COL6A6A6NMZ7 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
COL6A6A6NMZ7 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A6A6NMZ7 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A6A6NMZ7 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A6A6NMZ7 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
COL6A6A6NMZ7 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A6A6NMZ7 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
COL6A6A6NMZ7 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL6A6A6NMZ7 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.34
COL6A6A6NMZ7 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC17.14■□□□□ 0.34
COL6A6A6NMZ7 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
COL6A6A6NMZ7 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.34
COL6A6A6NMZ7 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
COL6A6A6NMZ7 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.14■□□□□ 0.33
COL6A6A6NMZ7 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.14■□□□□ 0.33
COL6A6A6NMZ7 AC009065.1-201ENST00000564055 1225 ntBASIC17.14■□□□□ 0.33
COL6A6A6NMZ7 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.14■□□□□ 0.33
COL6A6A6NMZ7 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
COL6A6A6NMZ7 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC17.14■□□□□ 0.33
COL6A6A6NMZ7 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL6A6A6NMZ7 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC17.14■□□□□ 0.33
COL6A6A6NMZ7 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL6A6A6NMZ7 Z83836.1-201ENST00000624605 1642 ntBASIC17.14■□□□□ 0.33
COL6A6A6NMZ7 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.14■□□□□ 0.33
COL6A6A6NMZ7 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC17.14■□□□□ 0.33
COL6A6A6NMZ7 UPF3AP3-201ENST00000420996 769 ntBASIC17.14■□□□□ 0.33
COL6A6A6NMZ7 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL6A6A6NMZ7 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.14■□□□□ 0.33
COL6A6A6NMZ7 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.14■□□□□ 0.33
COL6A6A6NMZ7 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.14■□□□□ 0.33
COL6A6A6NMZ7 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL6A6A6NMZ7 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC17.14■□□□□ 0.33
COL6A6A6NMZ7 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL6A6A6NMZ7 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.14■□□□□ 0.33
COL6A6A6NMZ7 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL6A6A6NMZ7 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC17.14■□□□□ 0.33
COL6A6A6NMZ7 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.13■□□□□ 0.33
COL6A6A6NMZ7 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL6A6A6NMZ7 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.13■□□□□ 0.33
COL6A6A6NMZ7 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC17.13■□□□□ 0.33
COL6A6A6NMZ7 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL6A6A6NMZ7 AC024243.1-201ENST00000609234 778 ntBASIC17.13■□□□□ 0.33
COL6A6A6NMZ7 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL6A6A6NMZ7 AC006128.1-201ENST00000624704 1661 ntBASIC17.13■□□□□ 0.33
COL6A6A6NMZ7 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.13■□□□□ 0.33
COL6A6A6NMZ7 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL6A6A6NMZ7 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL6A6A6NMZ7 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL6A6A6NMZ7 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.13■□□□□ 0.33
COL6A6A6NMZ7 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
COL6A6A6NMZ7 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC17.13■□□□□ 0.33
COL6A6A6NMZ7 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL6A6A6NMZ7 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL6A6A6NMZ7 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC17.13■□□□□ 0.33
COL6A6A6NMZ7 AC090616.6-201ENST00000582640 721 ntBASIC17.13■□□□□ 0.33
COL6A6A6NMZ7 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC17.13■□□□□ 0.33
COL6A6A6NMZ7 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL6A6A6NMZ7 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
COL6A6A6NMZ7 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 AC004967.1-201ENST00000453589 447 ntBASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 AC079602.3-201ENST00000623931 403 ntBASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 AL049796.1-201ENST00000565336 1766 ntBASIC17.12■□□□□ 0.33
COL6A6A6NMZ7 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms