Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC33.04■■■□□ 2.88
CCDC88BA6NC98 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC33.04■■■□□ 2.88
CCDC88BA6NC98 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC33.04■■■□□ 2.88
CCDC88BA6NC98 EMBP1-201ENST00000458200 901 ntBASIC33.04■■■□□ 2.88
CCDC88BA6NC98 LBX2-AS1-202ENST00000603175 2083 ntBASIC33.03■■■□□ 2.88
CCDC88BA6NC98 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC33.03■■■□□ 2.88
CCDC88BA6NC98 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC33.03■■■□□ 2.88
CCDC88BA6NC98 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
CCDC88BA6NC98 TSPY22P-201ENST00000427496 604 ntBASIC33.03■■■□□ 2.88
CCDC88BA6NC98 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC33.03■■■□□ 2.88
CCDC88BA6NC98 AC079781.3-201ENST00000449110 356 ntBASIC33.03■■■□□ 2.88
CCDC88BA6NC98 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC33.03■■■□□ 2.88
CCDC88BA6NC98 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
CCDC88BA6NC98 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
CCDC88BA6NC98 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC33.02■■■□□ 2.88
CCDC88BA6NC98 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC33.02■■■□□ 2.88
CCDC88BA6NC98 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC33.02■■■□□ 2.88
CCDC88BA6NC98 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
CCDC88BA6NC98 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
CCDC88BA6NC98 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC33.02■■■□□ 2.88
CCDC88BA6NC98 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC33.02■■■□□ 2.88
CCDC88BA6NC98 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
CCDC88BA6NC98 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC33.02■■■□□ 2.88
CCDC88BA6NC98 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC33.02■■■□□ 2.88
CCDC88BA6NC98 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC33.02■■■□□ 2.88
CCDC88BA6NC98 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC33.02■■■□□ 2.88
CCDC88BA6NC98 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC33.02■■■□□ 2.88
CCDC88BA6NC98 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC33.02■■■□□ 2.88
CCDC88BA6NC98 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC33.02■■■□□ 2.88
CCDC88BA6NC98 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
CCDC88BA6NC98 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC33.02■■■□□ 2.88
CCDC88BA6NC98 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC33.02■■■□□ 2.88
CCDC88BA6NC98 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
CCDC88BA6NC98 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC33.02■■■□□ 2.88
CCDC88BA6NC98 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC33.01■■■□□ 2.88
CCDC88BA6NC98 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC33.01■■■□□ 2.88
CCDC88BA6NC98 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.88
CCDC88BA6NC98 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC33.01■■■□□ 2.88
CCDC88BA6NC98 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC33.01■■■□□ 2.88
CCDC88BA6NC98 GRAMD4P1-201ENST00000435181 1110 ntBASIC33.01■■■□□ 2.88
CCDC88BA6NC98 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC33.01■■■□□ 2.88
CCDC88BA6NC98 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC33.01■■■□□ 2.88
CCDC88BA6NC98 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC33.01■■■□□ 2.88
CCDC88BA6NC98 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC33.01■■■□□ 2.88
CCDC88BA6NC98 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC33.01■■■□□ 2.88
CCDC88BA6NC98 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.87
CCDC88BA6NC98 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC33.01■■■□□ 2.87
CCDC88BA6NC98 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC33.01■■■□□ 2.87
CCDC88BA6NC98 AL137060.1-201ENST00000618151 2648 ntBASIC33■■■□□ 2.87
CCDC88BA6NC98 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC33■■■□□ 2.87
CCDC88BA6NC98 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
CCDC88BA6NC98 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
CCDC88BA6NC98 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC33■■■□□ 2.87
CCDC88BA6NC98 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
CCDC88BA6NC98 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC33■■■□□ 2.87
CCDC88BA6NC98 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
CCDC88BA6NC98 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
CCDC88BA6NC98 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC33■■■□□ 2.87
CCDC88BA6NC98 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC33■■■□□ 2.87
CCDC88BA6NC98 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
CCDC88BA6NC98 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC32.99■■■□□ 2.87
CCDC88BA6NC98 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC32.99■■■□□ 2.87
CCDC88BA6NC98 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC32.99■■■□□ 2.87
CCDC88BA6NC98 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC32.99■■■□□ 2.87
CCDC88BA6NC98 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
CCDC88BA6NC98 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC32.99■■■□□ 2.87
CCDC88BA6NC98 TP73-202ENST00000354437 2140 ntTSL 5 BASIC32.99■■■□□ 2.87
CCDC88BA6NC98 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC32.99■■■□□ 2.87
CCDC88BA6NC98 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC32.99■■■□□ 2.87
CCDC88BA6NC98 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC32.99■■■□□ 2.87
CCDC88BA6NC98 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC32.99■■■□□ 2.87
CCDC88BA6NC98 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC32.99■■■□□ 2.87
CCDC88BA6NC98 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC32.99■■■□□ 2.87
CCDC88BA6NC98 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC32.99■■■□□ 2.87
CCDC88BA6NC98 LITAF-220ENST00000620789 692 ntTSL 5 BASIC32.99■■■□□ 2.87
CCDC88BA6NC98 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC32.99■■■□□ 2.87
CCDC88BA6NC98 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
CCDC88BA6NC98 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC32.98■■■□□ 2.87
CCDC88BA6NC98 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC32.98■■■□□ 2.87
CCDC88BA6NC98 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC32.98■■■□□ 2.87
CCDC88BA6NC98 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC32.98■■■□□ 2.87
CCDC88BA6NC98 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC32.98■■■□□ 2.87
CCDC88BA6NC98 TEX21P-204ENST00000641479 1693 ntBASIC32.98■■■□□ 2.87
CCDC88BA6NC98 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
CCDC88BA6NC98 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC32.98■■■□□ 2.87
CCDC88BA6NC98 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC32.98■■■□□ 2.87
CCDC88BA6NC98 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC32.98■■■□□ 2.87
CCDC88BA6NC98 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC32.98■■■□□ 2.87
CCDC88BA6NC98 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
CCDC88BA6NC98 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC32.98■■■□□ 2.87
CCDC88BA6NC98 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC32.98■■■□□ 2.87
CCDC88BA6NC98 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC32.98■■■□□ 2.87
CCDC88BA6NC98 NAA38-203ENST00000575071 553 ntTSL 2 BASIC32.98■■■□□ 2.87
CCDC88BA6NC98 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC32.98■■■□□ 2.87
CCDC88BA6NC98 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC32.97■■■□□ 2.87
CCDC88BA6NC98 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC32.97■■■□□ 2.87
CCDC88BA6NC98 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC32.97■■■□□ 2.87
CCDC88BA6NC98 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC32.97■■■□□ 2.87
CCDC88BA6NC98 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC32.97■■■□□ 2.87
CCDC88BA6NC98 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC32.96■■■□□ 2.87
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms