Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC8.26□□□□□ -1.09
MSH5O43196 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC8.26□□□□□ -1.09
MSH5O43196 NOS1-206ENST00000618760 12283 ntTSL 5 BASIC8.26□□□□□ -1.09
MSH5O43196 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC8.26□□□□□ -1.09
MSH5O43196 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC8.26□□□□□ -1.09
MSH5O43196 RNA5SP354-201ENST00000391247 136 ntBASIC8.26□□□□□ -1.09
MSH5O43196 MIR1178-201ENST00000408396 91 ntBASIC8.26□□□□□ -1.09
MSH5O43196 AL161932.1-201ENST00000437408 146 ntBASIC8.26□□□□□ -1.09
MSH5O43196 RN7SL132P-201ENST00000478131 296 ntBASIC8.26□□□□□ -1.09
MSH5O43196 RN7SL273P-201ENST00000481561 299 ntBASIC8.26□□□□□ -1.09
MSH5O43196 AC114781.3-201ENST00000512083 142 ntBASIC8.26□□□□□ -1.09
MSH5O43196 CKS1BP7-201ENST00000522230 235 ntBASIC8.26□□□□□ -1.09
MSH5O43196 MIR4489-201ENST00000578869 62 ntBASIC8.26□□□□□ -1.09
MSH5O43196 SNORD95-201ENST00000579879 68 ntBASIC8.26□□□□□ -1.09
MSH5O43196 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC8.26□□□□□ -1.09
MSH5O43196 ACACA-231ENST00000614428 9554 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
MSH5O43196 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
MSH5O43196 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC8.25□□□□□ -1.09
MSH5O43196 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC8.25□□□□□ -1.09
MSH5O43196 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
MSH5O43196 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC8.25□□□□□ -1.09
MSH5O43196 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC8.25□□□□□ -1.09
MSH5O43196 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC8.25□□□□□ -1.09
MSH5O43196 GNG5P2-201ENST00000372054 207 ntBASIC8.25□□□□□ -1.09
MSH5O43196 MIR181A2-201ENST00000384863 110 ntBASIC8.25□□□□□ -1.09
MSH5O43196 VPS25P1-201ENST00000455691 508 ntBASIC8.25□□□□□ -1.09
MSH5O43196 RNU6-687P-201ENST00000516443 89 ntBASIC8.25□□□□□ -1.09
MSH5O43196 AC004486.1-201ENST00000546846 233 ntBASIC8.25□□□□□ -1.09
MSH5O43196 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC8.25□□□□□ -1.09
MSH5O43196 MIR4701-201ENST00000583094 63 ntBASIC8.25□□□□□ -1.09
MSH5O43196 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC8.25□□□□□ -1.09
MSH5O43196 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC8.25□□□□□ -1.09
MSH5O43196 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC8.25□□□□□ -1.09
MSH5O43196 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
MSH5O43196 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC8.25□□□□□ -1.09
MSH5O43196 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
MSH5O43196 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
MSH5O43196 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC8.25□□□□□ -1.09
MSH5O43196 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
MSH5O43196 POT1-202ENST00000393329 3950 ntTSL 5 BASIC8.24□□□□□ -1.09
MSH5O43196 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
MSH5O43196 RNA5SP65-201ENST00000363166 119 ntBASIC8.24□□□□□ -1.09
MSH5O43196 RNU11-201ENST00000387069 134 ntBASIC8.24□□□□□ -1.09
MSH5O43196 AC009237.10-201ENST00000414112 510 ntBASIC8.24□□□□□ -1.09
MSH5O43196 AL359092.1-201ENST00000417156 265 ntBASIC8.24□□□□□ -1.09
MSH5O43196 CYCSP10-201ENST00000417973 294 ntBASIC8.24□□□□□ -1.09
MSH5O43196 KRTAP2-5P-201ENST00000446109 396 ntBASIC8.24□□□□□ -1.09
MSH5O43196 RPS26P39-201ENST00000469206 341 ntBASIC8.24□□□□□ -1.09
MSH5O43196 AC068657.1-201ENST00000520807 306 ntBASIC8.24□□□□□ -1.09
MSH5O43196 AC004232.1-201ENST00000571388 208 ntBASIC8.24□□□□□ -1.09
MSH5O43196 MIR3923-201ENST00000579521 83 ntBASIC8.24□□□□□ -1.09
MSH5O43196 AL360012.1-201ENST00000602813 131 ntBASIC8.24□□□□□ -1.09
MSH5O43196 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC8.24□□□□□ -1.09
MSH5O43196 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC8.24□□□□□ -1.09
MSH5O43196 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC8.24□□□□□ -1.09
MSH5O43196 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC8.24□□□□□ -1.09
MSH5O43196 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC8.24□□□□□ -1.09
MSH5O43196 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC8.24□□□□□ -1.09
MSH5O43196 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
MSH5O43196 NSF-206ENST00000575068 2667 ntTSL 2 BASIC8.24□□□□□ -1.09
MSH5O43196 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
MSH5O43196 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC8.24□□□□□ -1.09
MSH5O43196 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
MSH5O43196 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC8.23□□□□□ -1.09
MSH5O43196 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC8.23□□□□□ -1.09
MSH5O43196 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC8.23□□□□□ -1.09
MSH5O43196 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
MSH5O43196 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC8.23□□□□□ -1.09
MSH5O43196 RNA5SP477-201ENST00000362639 119 ntBASIC8.23□□□□□ -1.09
MSH5O43196 RNU6-271P-201ENST00000363858 105 ntBASIC8.23□□□□□ -1.09
MSH5O43196 SNORA18.2-201ENST00000383865 132 ntBASIC8.23□□□□□ -1.09
MSH5O43196 RNU6-540P-201ENST00000384622 101 ntBASIC8.23□□□□□ -1.09
MSH5O43196 U8.12-201ENST00000384701 133 ntBASIC8.23□□□□□ -1.09
MSH5O43196 RN7SKP281-201ENST00000410472 352 ntBASIC8.23□□□□□ -1.09
MSH5O43196 AC108145.1-201ENST00000503770 153 ntBASIC8.23□□□□□ -1.09
MSH5O43196 MRPS17P9-201ENST00000511924 393 ntBASIC8.23□□□□□ -1.09
MSH5O43196 RNU7-70P-201ENST00000516941 66 ntBASIC8.23□□□□□ -1.09
MSH5O43196 AC007225.2-201ENST00000562529 256 ntBASIC8.23□□□□□ -1.09
MSH5O43196 CCT7-217ENST00000626868 249 ntTSL 5 BASIC8.23□□□□□ -1.09
MSH5O43196 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC8.23□□□□□ -1.09
MSH5O43196 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC8.23□□□□□ -1.09
MSH5O43196 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC8.23□□□□□ -1.09
MSH5O43196 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC8.23□□□□□ -1.09
MSH5O43196 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
MSH5O43196 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
MSH5O43196 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC8.22□□□□□ -1.09
MSH5O43196 DOCK11P1-201ENST00000553480 5932 ntBASIC8.22□□□□□ -1.09
MSH5O43196 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
MSH5O43196 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC8.22□□□□□ -1.09
MSH5O43196 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
MSH5O43196 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
MSH5O43196 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC8.22□□□□□ -1.09
MSH5O43196 RNU2-49P-201ENST00000410666 184 ntBASIC8.22□□□□□ -1.09
MSH5O43196 CYP4F29P-201ENST00000420685 446 ntBASIC8.22□□□□□ -1.09
MSH5O43196 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
MSH5O43196 AC023141.3-201ENST00000436698 278 ntBASIC8.22□□□□□ -1.09
MSH5O43196 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC8.22□□□□□ -1.09
MSH5O43196 MIR3683-201ENST00000580847 82 ntBASIC8.22□□□□□ -1.09
MSH5O43196 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC8.22□□□□□ -1.09
MSH5O43196 MIR6719-201ENST00000622428 87 ntBASIC8.22□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms