Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 AC022819.1-201ENST00000563495 3910 ntBASIC9.03□□□□□ -0.96
SENP3Q9H4L4 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC9.03□□□□□ -0.96
SENP3Q9H4L4 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC9.03□□□□□ -0.96
SENP3Q9H4L4 BTN3A2-201ENST00000356386 3017 ntAPPRIS P3 TSL 5 BASIC9.02□□□□□ -0.96
SENP3Q9H4L4 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.96
SENP3Q9H4L4 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC9.02□□□□□ -0.97
SENP3Q9H4L4 SNORD16-201ENST00000362803 99 ntBASIC9.02□□□□□ -0.97
SENP3Q9H4L4 PVALB-202ENST00000404171 422 ntTSL 2 BASIC9.02□□□□□ -0.97
SENP3Q9H4L4 Y_RNA.621-201ENST00000411065 96 ntBASIC9.02□□□□□ -0.97
SENP3Q9H4L4 AL513477.1-202ENST00000417061 214 ntBASIC9.02□□□□□ -0.97
SENP3Q9H4L4 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC9.02□□□□□ -0.97
SENP3Q9H4L4 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC9.02□□□□□ -0.97
SENP3Q9H4L4 AL591767.3-201ENST00000554632 525 ntBASIC9.02□□□□□ -0.97
SENP3Q9H4L4 AC123769.2-201ENST00000624332 5984 ntBASIC9.02□□□□□ -0.97
SENP3Q9H4L4 CACNA1D-219ENST00000636938 6868 ntAPPRIS ALT2 TSL 5 BASIC9.02□□□□□ -0.97
SENP3Q9H4L4 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.97
SENP3Q9H4L4 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC9.02□□□□□ -0.97
SENP3Q9H4L4 EPB41-201ENST00000343067 5956 ntAPPRIS P1 TSL 5 BASIC9.01□□□□□ -0.97
SENP3Q9H4L4 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
SENP3Q9H4L4 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC9.01□□□□□ -0.97
SENP3Q9H4L4 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
SENP3Q9H4L4 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC9.01□□□□□ -0.97
SENP3Q9H4L4 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC9.01□□□□□ -0.97
SENP3Q9H4L4 RNU6-217P-201ENST00000384164 104 ntBASIC9.01□□□□□ -0.97
SENP3Q9H4L4 SDHCP2-201ENST00000398565 501 ntBASIC9.01□□□□□ -0.97
SENP3Q9H4L4 Z92545.1-201ENST00000411782 234 ntBASIC9.01□□□□□ -0.97
SENP3Q9H4L4 AC093423.1-201ENST00000440817 142 ntBASIC9.01□□□□□ -0.97
SENP3Q9H4L4 AC108729.3-201ENST00000513484 108 ntBASIC9.01□□□□□ -0.97
SENP3Q9H4L4 SNORA70.16-201ENST00000516390 95 ntBASIC9.01□□□□□ -0.97
SENP3Q9H4L4 RN7SKP98-201ENST00000517070 156 ntBASIC9.01□□□□□ -0.97
SENP3Q9H4L4 SMG1P4-204ENST00000523028 4131 ntBASIC9.01□□□□□ -0.97
SENP3Q9H4L4 AC106785.4-201ENST00000569492 412 ntBASIC9.01□□□□□ -0.97
SENP3Q9H4L4 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC9.01□□□□□ -0.97
SENP3Q9H4L4 RN7SL703P-201ENST00000578485 302 ntBASIC9.01□□□□□ -0.97
SENP3Q9H4L4 SNORA70D-201ENST00000578836 135 ntBASIC9.01□□□□□ -0.97
SENP3Q9H4L4 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC9.01□□□□□ -0.97
SENP3Q9H4L4 OPALIN-201ENST00000371172 3557 ntAPPRIS P1 TSL 1 (best) BASIC9.01□□□□□ -0.97
SENP3Q9H4L4 CD46-201ENST00000322875 3278 ntAPPRIS P4 TSL 1 (best) BASIC9.01□□□□□ -0.97
SENP3Q9H4L4 CD46-207ENST00000367041 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC9.01□□□□□ -0.97
SENP3Q9H4L4 AC109361.1-201ENST00000513220 3526 ntTSL 2 BASIC9.01□□□□□ -0.97
SENP3Q9H4L4 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC9.01□□□□□ -0.97
SENP3Q9H4L4 ARHGAP42P4-201ENST00000549782 2934 ntBASIC9.01□□□□□ -0.97
SENP3Q9H4L4 AL662795.2-201ENST00000624252 3706 ntBASIC9.01□□□□□ -0.97
SENP3Q9H4L4 TDRD3-209ENST00000621840 2497 ntTSL 1 (best) BASIC9□□□□□ -0.97
SENP3Q9H4L4 BDNF-207ENST00000395986 3979 ntTSL 1 (best) BASIC9□□□□□ -0.97
SENP3Q9H4L4 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC9□□□□□ -0.97
SENP3Q9H4L4 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC9□□□□□ -0.97
SENP3Q9H4L4 Y_RNA.351-201ENST00000365436 96 ntBASIC9□□□□□ -0.97
SENP3Q9H4L4 SNORA56-201ENST00000383966 129 ntBASIC9□□□□□ -0.97
SENP3Q9H4L4 RPL37P18-201ENST00000411602 243 ntBASIC9□□□□□ -0.97
SENP3Q9H4L4 AP001880.2-201ENST00000538233 448 ntBASIC9□□□□□ -0.97
SENP3Q9H4L4 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC9□□□□□ -0.97
SENP3Q9H4L4 AL136228.1-201ENST00000622221 319 ntBASIC9□□□□□ -0.97
SENP3Q9H4L4 MIR6810-201ENST00000622701 70 ntBASIC9□□□□□ -0.97
SENP3Q9H4L4 JPX-212ENST00000639185 9658 ntTSL 5 BASIC9□□□□□ -0.97
SENP3Q9H4L4 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC9□□□□□ -0.97
SENP3Q9H4L4 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC9□□□□□ -0.97
SENP3Q9H4L4 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
SENP3Q9H4L4 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.97
SENP3Q9H4L4 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.97
SENP3Q9H4L4 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
SENP3Q9H4L4 SERPINB13-201ENST00000269489 3206 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
SENP3Q9H4L4 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC8.99□□□□□ -0.97
SENP3Q9H4L4 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC8.99□□□□□ -0.97
SENP3Q9H4L4 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC8.99□□□□□ -0.97
SENP3Q9H4L4 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC8.99□□□□□ -0.97
SENP3Q9H4L4 SNORA21-201ENST00000362423 132 ntBASIC8.99□□□□□ -0.97
SENP3Q9H4L4 Y_RNA.242-201ENST00000364473 110 ntBASIC8.99□□□□□ -0.97
SENP3Q9H4L4 AL133270.1-201ENST00000402635 279 ntBASIC8.99□□□□□ -0.97
SENP3Q9H4L4 RNU6ATAC10P-201ENST00000408635 111 ntBASIC8.99□□□□□ -0.97
SENP3Q9H4L4 RNU6-380P-201ENST00000410207 107 ntBASIC8.99□□□□□ -0.97
SENP3Q9H4L4 RNA5SP144-201ENST00000410846 116 ntBASIC8.99□□□□□ -0.97
SENP3Q9H4L4 RNU6-57P-201ENST00000411348 103 ntBASIC8.99□□□□□ -0.97
SENP3Q9H4L4 AL022718.1-201ENST00000412004 84 ntBASIC8.99□□□□□ -0.97
SENP3Q9H4L4 SNORA25.13-201ENST00000516395 103 ntBASIC8.99□□□□□ -0.97
SENP3Q9H4L4 AP000550.3-201ENST00000637734 379 ntBASIC8.99□□□□□ -0.97
SENP3Q9H4L4 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC8.99□□□□□ -0.97
SENP3Q9H4L4 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
SENP3Q9H4L4 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC8.98□□□□□ -0.97
SENP3Q9H4L4 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC8.98□□□□□ -0.97
SENP3Q9H4L4 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
SENP3Q9H4L4 Y_RNA.299-201ENST00000364973 94 ntBASIC8.98□□□□□ -0.97
SENP3Q9H4L4 MIR548O-201ENST00000408583 114 ntBASIC8.98□□□□□ -0.97
SENP3Q9H4L4 HMGN1P7-201ENST00000491722 313 ntBASIC8.98□□□□□ -0.97
SENP3Q9H4L4 AC008953.1-201ENST00000497334 318 ntBASIC8.98□□□□□ -0.97
SENP3Q9H4L4 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC8.98□□□□□ -0.97
SENP3Q9H4L4 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC8.98□□□□□ -0.97
SENP3Q9H4L4 AC091932.4-201ENST00000623386 200 ntBASIC8.98□□□□□ -0.97
SENP3Q9H4L4 AC026951.1-201ENST00000559530 2459 ntBASIC8.98□□□□□ -0.97
SENP3Q9H4L4 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC8.98□□□□□ -0.97
SENP3Q9H4L4 CSDE1-201ENST00000261443 3228 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
SENP3Q9H4L4 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
SENP3Q9H4L4 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
SENP3Q9H4L4 MAPK10-323ENST00000641493 3207 ntBASIC8.97□□□□□ -0.97
SENP3Q9H4L4 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC8.97□□□□□ -0.97
SENP3Q9H4L4 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC8.97□□□□□ -0.97
SENP3Q9H4L4 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC8.97□□□□□ -0.97
SENP3Q9H4L4 Y_RNA.440-201ENST00000384120 114 ntBASIC8.97□□□□□ -0.97
SENP3Q9H4L4 TRIM6-205ENST00000445329 2951 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
SENP3Q9H4L4 RNU7-80P-201ENST00000459562 61 ntBASIC8.97□□□□□ -0.97
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms