Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC4.79□□□□□ -1.64
MSX1P28360 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
MSX1P28360 AC027309.3-201ENST00000623419 351 ntBASIC4.79□□□□□ -1.64
MSX1P28360 SCARNA4-202ENST00000625402 129 ntBASIC4.79□□□□□ -1.64
MSX1P28360 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
MSX1P28360 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
MSX1P28360 AC107027.3-201ENST00000565095 3473 ntBASIC4.79□□□□□ -1.64
MSX1P28360 AL353743.1-202ENST00000431724 1695 ntBASIC4.79□□□□□ -1.64
MSX1P28360 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
MSX1P28360 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.79□□□□□ -1.64
MSX1P28360 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
MSX1P28360 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.78□□□□□ -1.64
MSX1P28360 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
MSX1P28360 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
MSX1P28360 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
MSX1P28360 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
MSX1P28360 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
MSX1P28360 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC4.78□□□□□ -1.64
MSX1P28360 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
MSX1P28360 SNORA17.1-201ENST00000362945 126 ntBASIC4.78□□□□□ -1.64
MSX1P28360 RNA5SP90-201ENST00000364801 99 ntBASIC4.78□□□□□ -1.64
MSX1P28360 Y_RNA.331-201ENST00000365267 102 ntBASIC4.78□□□□□ -1.64
MSX1P28360 RNU6-541P-201ENST00000384709 110 ntBASIC4.78□□□□□ -1.64
MSX1P28360 Y_RNA.571-201ENST00000384753 98 ntBASIC4.78□□□□□ -1.64
MSX1P28360 MIR589-201ENST00000385238 99 ntBASIC4.78□□□□□ -1.64
MSX1P28360 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
MSX1P28360 EIF4EBP2P3-201ENST00000403144 334 ntBASIC4.78□□□□□ -1.64
MSX1P28360 RNU6ATAC7P-201ENST00000408111 127 ntBASIC4.78□□□□□ -1.64
MSX1P28360 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.78□□□□□ -1.64
MSX1P28360 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC4.78□□□□□ -1.64
MSX1P28360 TBCAP2-201ENST00000416175 326 ntBASIC4.78□□□□□ -1.64
MSX1P28360 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC4.78□□□□□ -1.64
MSX1P28360 AC008267.6-201ENST00000441664 139 ntBASIC4.78□□□□□ -1.64
MSX1P28360 NUTF2P7-201ENST00000453086 375 ntBASIC4.78□□□□□ -1.64
MSX1P28360 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC4.78□□□□□ -1.64
MSX1P28360 RN7SL814P-201ENST00000487715 300 ntBASIC4.78□□□□□ -1.64
MSX1P28360 AF186996.7-201ENST00000492781 209 ntBASIC4.78□□□□□ -1.64
MSX1P28360 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4.78□□□□□ -1.64
MSX1P28360 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC4.78□□□□□ -1.64
MSX1P28360 AC024940.3-201ENST00000538551 316 ntBASIC4.78□□□□□ -1.64
MSX1P28360 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC4.78□□□□□ -1.64
MSX1P28360 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC4.78□□□□□ -1.64
MSX1P28360 AC099669.2-201ENST00000616549 437 ntBASIC4.78□□□□□ -1.64
MSX1P28360 AC241585.2-209ENST00000638217 143 ntBASIC4.78□□□□□ -1.64
MSX1P28360 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
MSX1P28360 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.78□□□□□ -1.64
MSX1P28360 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
MSX1P28360 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC4.77□□□□□ -1.65
MSX1P28360 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
MSX1P28360 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.77□□□□□ -1.65
MSX1P28360 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
MSX1P28360 RNU6-653P-201ENST00000363074 106 ntBASIC4.77□□□□□ -1.65
MSX1P28360 RNA5SP197-201ENST00000363357 119 ntBASIC4.77□□□□□ -1.65
MSX1P28360 RNU6-961P-201ENST00000363893 105 ntBASIC4.77□□□□□ -1.65
MSX1P28360 RNU4-56P-201ENST00000364700 142 ntBASIC4.77□□□□□ -1.65
MSX1P28360 RNU6-215P-201ENST00000365169 102 ntBASIC4.77□□□□□ -1.65
MSX1P28360 SNORA56-201ENST00000383966 129 ntBASIC4.77□□□□□ -1.65
MSX1P28360 RNU6-356P-201ENST00000384140 107 ntBASIC4.77□□□□□ -1.65
MSX1P28360 RNU6-281P-201ENST00000384212 103 ntBASIC4.77□□□□□ -1.65
MSX1P28360 RNU6-72P-201ENST00000384285 79 ntBASIC4.77□□□□□ -1.65
MSX1P28360 MIR600-201ENST00000385007 98 ntBASIC4.77□□□□□ -1.65
MSX1P28360 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC4.77□□□□□ -1.65
MSX1P28360 RPL17P36-201ENST00000420302 549 ntBASIC4.77□□□□□ -1.65
MSX1P28360 SSXP4-201ENST00000451349 245 ntBASIC4.77□□□□□ -1.65
MSX1P28360 RPL23AP3-201ENST00000453844 468 ntBASIC4.77□□□□□ -1.65
MSX1P28360 AC092490.3-201ENST00000545370 572 ntBASIC4.77□□□□□ -1.65
MSX1P28360 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC4.77□□□□□ -1.65
MSX1P28360 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.77□□□□□ -1.65
MSX1P28360 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.77□□□□□ -1.65
MSX1P28360 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.77□□□□□ -1.65
MSX1P28360 AL133393.1-201ENST00000603277 287 ntBASIC4.77□□□□□ -1.65
MSX1P28360 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.77□□□□□ -1.65
MSX1P28360 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC4.77□□□□□ -1.65
MSX1P28360 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
MSX1P28360 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC4.77□□□□□ -1.65
MSX1P28360 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
MSX1P28360 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.77□□□□□ -1.65
MSX1P28360 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
MSX1P28360 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
MSX1P28360 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
MSX1P28360 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
MSX1P28360 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
MSX1P28360 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
MSX1P28360 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
MSX1P28360 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.76□□□□□ -1.65
MSX1P28360 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
MSX1P28360 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
MSX1P28360 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
MSX1P28360 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
MSX1P28360 U3.3-201ENST00000362986 216 ntBASIC4.76□□□□□ -1.65
MSX1P28360 RNU6-312P-201ENST00000364629 107 ntBASIC4.76□□□□□ -1.65
MSX1P28360 RNA5SP205-201ENST00000364653 136 ntBASIC4.76□□□□□ -1.65
MSX1P28360 RNA5SP223-201ENST00000365174 120 ntBASIC4.76□□□□□ -1.65
MSX1P28360 Y_RNA.353-201ENST00000365440 108 ntBASIC4.76□□□□□ -1.65
MSX1P28360 MIR10B-201ENST00000385011 110 ntBASIC4.76□□□□□ -1.65
MSX1P28360 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
MSX1P28360 MIR1182-201ENST00000408363 97 ntBASIC4.76□□□□□ -1.65
MSX1P28360 AC092017.2-201ENST00000427600 362 ntBASIC4.76□□□□□ -1.65
MSX1P28360 AC009238.2-201ENST00000431026 355 ntBASIC4.76□□□□□ -1.65
MSX1P28360 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 10.1 ms