RNA–Protein interactions for RNA: ENST00000364700.1

RNU4-56P-201, Transcript of RNA, U4 small nuclear 56, pseudogene, humanhuman

BASIC

Gene RNU4-56P, Length 142 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-56P-201ENST00000364700 AEBP2Q6ZN18 517 aaPredicted RBP15.38■□□□□ 0.05
RNU4-56P-201ENST00000364700 CHIC1Q5VXU3 224 aa14.56□□□□□ -0.08
RNU4-56P-201ENST00000364700 SENP3Q9H4L4 574 aaPredicted RBP13.2□□□□□ -0.3
RNU4-56P-201ENST00000364700 PHF23Q9BUL5 403 aaPredicted RBP12.97□□□□□ -0.33
RNU4-56P-201ENST00000364700 FOXD1Q16676 465 aa12.27□□□□□ -0.45
RNU4-56P-201ENST00000364700 PLPPR3Q6T4P5 718 aa11.62□□□□□ -0.55
RNU4-56P-201ENST00000364700 MSH5O43196 834 aa11.56□□□□□ -0.56
RNU4-56P-201ENST00000364700 PIAS4Q8N2W9 510 aaPredicted RBP11.45□□□□□ -0.58
RNU4-56P-201ENST00000364700 POTEDQ86YR6 584 aa11.39□□□□□ -0.59
RNU4-56P-201ENST00000364700 PPP6R1Q9UPN7 881 aa11.38□□□□□ -0.59
RNU4-56P-201ENST00000364700 ADRA2BP18089 450 aa11.34□□□□□ -0.59
RNU4-56P-201ENST00000364700 SCAF1Q9H7N4 1312 aaKnown RBP10.46□□□□□ -0.73
RNU4-56P-201ENST00000364700 DMRT2Q9Y5R5 561 aa10.44□□□□□ -0.74
RNU4-56P-201ENST00000364700 MAPK8IP2Q13387 824 aaPredicted RBP10.42□□□□□ -0.74
RNU4-56P-201ENST00000364700 PPP4R3CPQ6ZMV5 832 aa10.14□□□□□ -0.79
RNU4-56P-201ENST00000364700 HOXD11P31277 338 aaPredicted RBP10.03□□□□□ -0.8
RNU4-56P-201ENST00000364700 CNKSR2Q8WXI2 1034 aa9.99□□□□□ -0.81
RNU4-56P-201ENST00000364700 DCAF8L1A6NGE4 600 aa9.96□□□□□ -0.82
RNU4-56P-201ENST00000364700 CACNB1Q02641 598 aaPredicted RBP9.93□□□□□ -0.82
RNU4-56P-201ENST00000364700 RNF216Q9NWF9 866 aaPredicted RBP9.93□□□□□ -0.82
RNU4-56P-201ENST00000364700 RNF39Q9H2S5 420 aa9.84□□□□□ -0.83
RNU4-56P-201ENST00000364700 NCBP3Q53F19 620 aaKnown RBP9.77□□□□□ -0.85
RNU4-56P-201ENST00000364700 DNAJC5BQ9UF47 199 aa9.77□□□□□ -0.85
RNU4-56P-201ENST00000364700 C1QBPQ07021 282 aaKnown RBP9.72□□□□□ -0.85
RNU4-56P-201ENST00000364700 NPM3O75607 178 aaKnown RBP9.58□□□□□ -0.88
RNU4-56P-201ENST00000364700 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.53□□□□□ -0.88
RNU4-56P-201ENST00000364700 U3KPZ7 1027 aaPredicted RBP9.31□□□□□ -0.92
RNU4-56P-201ENST00000364700 KCNA4P22459 653 aa9.3□□□□□ -0.92
RNU4-56P-201ENST00000364700 CAPN15O75808 1086 aa9.19□□□□□ -0.94
RNU4-56P-201ENST00000364700 SPINK5Q9NQ38 1064 aaPredicted RBP9.18□□□□□ -0.94
RNU4-56P-201ENST00000364700 SLC4A2P04920 1241 aa9.17□□□□□ -0.94
RNU4-56P-201ENST00000364700 DSG3P32926 999 aa9.17□□□□□ -0.94
RNU4-56P-201ENST00000364700 APLP2Q06481 763 aa9.12□□□□□ -0.95
RNU4-56P-201ENST00000364700 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.09□□□□□ -0.95
RNU4-56P-201ENST00000364700 HNRNPUL2Q1KMD3 747 aaKnown RBP9.09□□□□□ -0.95
RNU4-56P-201ENST00000364700 ZNF219Q9P2Y4 722 aaPredicted RBP9.04□□□□□ -0.96
RNU4-56P-201ENST00000364700 SAMD1Q6SPF0 538 aaPredicted RBP9.02□□□□□ -0.97
RNU4-56P-201ENST00000364700 TRHP20396 242 aaPredicted RBP9□□□□□ -0.97
RNU4-56P-201ENST00000364700 ABCB7O75027 752 aa8.94□□□□□ -0.98
RNU4-56P-201ENST00000364700 POTEHQ6S545 545 aa8.91□□□□□ -0.98
RNU4-56P-201ENST00000364700 MYCNP04198 464 aaPredicted RBP8.89□□□□□ -0.99
RNU4-56P-201ENST00000364700 RBM42Q9BTD8 480 aaKnown RBP8.8□□□□□ -1
RNU4-56P-201ENST00000364700 SLC4A1APQ9BWU0 796 aaKnown RBP8.79□□□□□ -1
RNU4-56P-201ENST00000364700 POLA2Q14181 598 aa8.76□□□□□ -1.01
RNU4-56P-201ENST00000364700 FOXD4L1Q9NU39 408 aa8.74□□□□□ -1.01
RNU4-56P-201ENST00000364700 ZBTB12Q9Y330 459 aaPredicted RBP8.65□□□□□ -1.02
RNU4-56P-201ENST00000364700 ATF5Q9Y2D1 282 aaPredicted RBP8.63□□□□□ -1.03
RNU4-56P-201ENST00000364700 CHRDL2Q6WN34 429 aa8.6□□□□□ -1.03
RNU4-56P-201ENST00000364700 AKT1S1Q96B36 256 aa8.56□□□□□ -1.04
RNU4-56P-201ENST00000364700 ZBTB22O15209 634 aa8.54□□□□□ -1.04
RNU4-56P-201ENST00000364700 ATXN8OSP0DMR3 200 aa8.53□□□□□ -1.04
RNU4-56P-201ENST00000364700 OSCARQ8IYS5 282 aa8.48□□□□□ -1.05
RNU4-56P-201ENST00000364700 REM2Q8IYK8 340 aaPredicted RBP8.46□□□□□ -1.06
RNU4-56P-201ENST00000364700 FBLN2P98095 1184 aa8.37□□□□□ -1.07
RNU4-56P-201ENST00000364700 PITPNM1O00562 1244 aa8.36□□□□□ -1.07
RNU4-56P-201ENST00000364700 PIP4P2Q8N4L2 257 aa8.36□□□□□ -1.07
RNU4-56P-201ENST00000364700 SPDYE2BA6NHP3 402 aa8.35□□□□□ -1.07
RNU4-56P-201ENST00000364700 SPDYE6P0CI01 402 aa8.35□□□□□ -1.07
RNU4-56P-201ENST00000364700 SPDYE2Q495Y8 402 aa8.35□□□□□ -1.07
RNU4-56P-201ENST00000364700 FXR2P51116 673 aaKnown RBP eCLIP8.33□□□□□ -1.08
RNU4-56P-201ENST00000364700 SP7Q8TDD2 431 aaPredicted RBP8.32□□□□□ -1.08
RNU4-56P-201ENST00000364700 MKRN4PQ13434 485 aaPredicted RBP8.25□□□□□ -1.09
RNU4-56P-201ENST00000364700 HAX1O00165 279 aa8.24□□□□□ -1.09
RNU4-56P-201ENST00000364700 SPDYE1Q8NFV5 336 aaPredicted RBP8.22□□□□□ -1.09
RNU4-56P-201ENST00000364700 SSUH2Q9Y2M2 353 aa8.22□□□□□ -1.09
RNU4-56P-201ENST00000364700 ZNF692Q9BU19 519 aaPredicted RBP8.21□□□□□ -1.1
RNU4-56P-201ENST00000364700 CLEC11AQ9Y240 323 aa8.15□□□□□ -1.1
RNU4-56P-201ENST00000364700 PRKAR2AP13861 404 aaKnown RBP8.14□□□□□ -1.11
RNU4-56P-201ENST00000364700 EVX2Q03828 476 aa8.1□□□□□ -1.11
RNU4-56P-201ENST00000364700 CSRNP3Q8WYN3 585 aa8.07□□□□□ -1.12
RNU4-56P-201ENST00000364700 C19orf67A6NJJ6 358 aa8.06□□□□□ -1.12
RNU4-56P-201ENST00000364700 PABPN1Q86U42 306 aaKnown RBP eCLIP8.06□□□□□ -1.12
RNU4-56P-201ENST00000364700 PRR29P0C7W0 189 aa8.03□□□□□ -1.12
RNU4-56P-201ENST00000364700 CHADLQ6NUI6 762 aa7.99□□□□□ -1.13
RNU4-56P-201ENST00000364700 GABBR2O75899 941 aa7.94□□□□□ -1.14
RNU4-56P-201ENST00000364700 EHMT2Q96KQ7 1210 aa7.92□□□□□ -1.14
RNU4-56P-201ENST00000364700 FARP1Q9Y4F1 1045 aaPredicted RBP7.92□□□□□ -1.14
RNU4-56P-201ENST00000364700 STAG3Q9UJ98 1225 aa7.89□□□□□ -1.15
RNU4-56P-201ENST00000364700 CD44P16070 742 aaKnown RBP7.88□□□□□ -1.15
RNU4-56P-201ENST00000364700 CLCN6P51797 869 aa7.88□□□□□ -1.15
RNU4-56P-201ENST00000364700 SPDYE4A6NLX3 237 aa7.83□□□□□ -1.16
RNU4-56P-201ENST00000364700 CREBZFQ9NS37 354 aa7.81□□□□□ -1.16
RNU4-56P-201ENST00000364700 LHX8Q68G74 356 aa7.8□□□□□ -1.16
RNU4-56P-201ENST00000364700 ZNF579Q8NAF0 562 aaKnown RBP7.79□□□□□ -1.16
RNU4-56P-201ENST00000364700 POTEIP0CG38 1075 aa7.76□□□□□ -1.17
RNU4-56P-201ENST00000364700 ZRANB1Q9UGI0 708 aa7.75□□□□□ -1.17
RNU4-56P-201ENST00000364700 DCBLD2Q96PD2 775 aa7.72□□□□□ -1.17
RNU4-56P-201ENST00000364700 PAK3O75914 559 aaPredicted RBP7.7□□□□□ -1.18
RNU4-56P-201ENST00000364700 NPM1P06748 294 aaKnown RBP eCLIP7.7□□□□□ -1.18
RNU4-56P-201ENST00000364700 MNX1P50219 401 aaPredicted RBP7.68□□□□□ -1.18
RNU4-56P-201ENST00000364700 PROM2Q8N271 834 aa7.67□□□□□ -1.18
RNU4-56P-201ENST00000364700 GALR2O43603 387 aaPredicted RBP7.64□□□□□ -1.19
RNU4-56P-201ENST00000364700 PHF12Q96QT6 1004 aa7.62□□□□□ -1.19
RNU4-56P-201ENST00000364700 ASTLQ6HA08 431 aaPredicted RBP7.53□□□□□ -1.2
RNU4-56P-201ENST00000364700 MS4A3Q96HJ5 214 aa7.52□□□□□ -1.21
RNU4-56P-201ENST00000364700 PLEKHG5O94827 1062 aa7.51□□□□□ -1.21
RNU4-56P-201ENST00000364700 CCDC61Q9Y6R9 512 aa7.51□□□□□ -1.21
RNU4-56P-201ENST00000364700 PELP1Q8IZL8 1130 aaKnown RBP7.5□□□□□ -1.21
RNU4-56P-201ENST00000364700 OTUD5Q96G74 571 aa7.5□□□□□ -1.21
RNU4-56P-201ENST00000364700 TSPYL2Q9H2G4 693 aaPredicted RBP7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms