Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC9.16□□□□□ -0.94
SENP3Q9H4L4 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
SENP3Q9H4L4 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC9.16□□□□□ -0.94
SENP3Q9H4L4 SLC15A2-205ENST00000489711 5673 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
SENP3Q9H4L4 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
SENP3Q9H4L4 PPARA-203ENST00000407236 9995 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
SENP3Q9H4L4 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC9.16□□□□□ -0.94
SENP3Q9H4L4 RNA5SP346-201ENST00000363541 121 ntBASIC9.16□□□□□ -0.94
SENP3Q9H4L4 RNU6-471P-201ENST00000383944 106 ntBASIC9.16□□□□□ -0.94
SENP3Q9H4L4 MIR325-201ENST00000385260 98 ntBASIC9.16□□□□□ -0.94
SENP3Q9H4L4 RBMY2UP-201ENST00000453474 324 ntBASIC9.16□□□□□ -0.94
SENP3Q9H4L4 RNU7-57P-201ENST00000459540 60 ntBASIC9.16□□□□□ -0.94
SENP3Q9H4L4 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC9.16□□□□□ -0.94
SENP3Q9H4L4 AC004232.1-201ENST00000571388 208 ntBASIC9.16□□□□□ -0.94
SENP3Q9H4L4 NXF4-201ENST00000360035 3617 ntTSL 2 BASIC9.16□□□□□ -0.94
SENP3Q9H4L4 NUMB-229ENST00000557597 3547 ntAPPRIS P3 TSL 1 (best) BASIC9.16□□□□□ -0.94
SENP3Q9H4L4 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC9.16□□□□□ -0.94
SENP3Q9H4L4 PCDH15-226ENST00000613657 6329 ntAPPRIS ALT2 TSL 5 BASIC9.16□□□□□ -0.94
SENP3Q9H4L4 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
SENP3Q9H4L4 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC9.16□□□□□ -0.94
SENP3Q9H4L4 AC107884.1-202ENST00000622955 2703 ntTSL 5 BASIC9.16□□□□□ -0.94
SENP3Q9H4L4 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC9.15□□□□□ -0.94
SENP3Q9H4L4 IPO5-222ENST00000490680 3419 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
SENP3Q9H4L4 ZNF23-204ENST00000428724 1932 ntAPPRIS P3 TSL 1 (best) BASIC9.15□□□□□ -0.94
SENP3Q9H4L4 CTNNA2-218ENST00000541047 2870 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
SENP3Q9H4L4 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC9.15□□□□□ -0.94
SENP3Q9H4L4 CTNNA1P1-201ENST00000515849 2728 ntBASIC9.15□□□□□ -0.94
SENP3Q9H4L4 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC9.15□□□□□ -0.94
SENP3Q9H4L4 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC9.15□□□□□ -0.94
SENP3Q9H4L4 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC9.15□□□□□ -0.94
SENP3Q9H4L4 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC9.15□□□□□ -0.94
SENP3Q9H4L4 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC9.15□□□□□ -0.94
SENP3Q9H4L4 AL591848.4-201ENST00000567832 3472 ntBASIC9.15□□□□□ -0.94
SENP3Q9H4L4 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
SENP3Q9H4L4 ZNF600-201ENST00000338230 3829 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
SENP3Q9H4L4 RNU4-16P-201ENST00000364737 141 ntBASIC9.15□□□□□ -0.94
SENP3Q9H4L4 PTMAP5-201ENST00000393073 333 ntBASIC9.15□□□□□ -0.94
SENP3Q9H4L4 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC9.15□□□□□ -0.94
SENP3Q9H4L4 PPIAP21-201ENST00000464473 501 ntBASIC9.15□□□□□ -0.94
SENP3Q9H4L4 RN7SL826P-201ENST00000479724 288 ntBASIC9.15□□□□□ -0.94
SENP3Q9H4L4 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC9.15□□□□□ -0.94
SENP3Q9H4L4 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC9.15□□□□□ -0.94
SENP3Q9H4L4 RNU6-86P-201ENST00000606534 107 ntBASIC9.15□□□□□ -0.94
SENP3Q9H4L4 Xist_exon4.1-201ENST00000615964 126 ntBASIC9.15□□□□□ -0.94
SENP3Q9H4L4 AL512310.12-203ENST00000640543 90 ntBASIC9.15□□□□□ -0.94
SENP3Q9H4L4 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC9.15□□□□□ -0.94
SENP3Q9H4L4 DMD-228ENST00000541735 7080 ntTSL 5 BASIC9.15□□□□□ -0.94
SENP3Q9H4L4 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC9.15□□□□□ -0.94
SENP3Q9H4L4 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC9.15□□□□□ -0.94
SENP3Q9H4L4 TRIM34-201ENST00000429814 2311 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.95
SENP3Q9H4L4 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC9.15□□□□□ -0.95
SENP3Q9H4L4 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC9.15□□□□□ -0.95
SENP3Q9H4L4 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC9.15□□□□□ -0.95
SENP3Q9H4L4 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC9.14□□□□□ -0.95
SENP3Q9H4L4 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
SENP3Q9H4L4 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
SENP3Q9H4L4 PHLDB2-201ENST00000393923 5673 ntTSL 2 BASIC9.14□□□□□ -0.95
SENP3Q9H4L4 ZNF521-214ENST00000584787 4327 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
SENP3Q9H4L4 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC9.14□□□□□ -0.95
SENP3Q9H4L4 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC9.14□□□□□ -0.95
SENP3Q9H4L4 CD46-203ENST00000354848 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC9.14□□□□□ -0.95
SENP3Q9H4L4 NME1P1-201ENST00000420914 382 ntBASIC9.14□□□□□ -0.95
SENP3Q9H4L4 RPS27P18-201ENST00000431701 247 ntBASIC9.14□□□□□ -0.95
SENP3Q9H4L4 AC064862.4-201ENST00000442180 334 ntBASIC9.14□□□□□ -0.95
SENP3Q9H4L4 RN7SKP66-201ENST00000516681 231 ntBASIC9.14□□□□□ -0.95
SENP3Q9H4L4 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC9.14□□□□□ -0.95
SENP3Q9H4L4 SOX6-202ENST00000396356 8865 ntAPPRIS P3 TSL 1 (best) BASIC9.14□□□□□ -0.95
SENP3Q9H4L4 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC9.14□□□□□ -0.95
SENP3Q9H4L4 RNF217-AS1-201ENST00000439075 4507 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
SENP3Q9H4L4 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
SENP3Q9H4L4 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
SENP3Q9H4L4 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC9.13□□□□□ -0.95
SENP3Q9H4L4 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
SENP3Q9H4L4 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
SENP3Q9H4L4 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC9.13□□□□□ -0.95
SENP3Q9H4L4 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC9.13□□□□□ -0.95
SENP3Q9H4L4 TMEM192-201ENST00000306480 10012 ntAPPRIS P1 TSL 1 (best) BASIC9.13□□□□□ -0.95
SENP3Q9H4L4 RNU6-743P-201ENST00000364151 106 ntBASIC9.13□□□□□ -0.95
SENP3Q9H4L4 SNORA70-201ENST00000384436 135 ntBASIC9.13□□□□□ -0.95
SENP3Q9H4L4 AC008753.1-201ENST00000423096 284 ntBASIC9.13□□□□□ -0.95
SENP3Q9H4L4 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC9.13□□□□□ -0.95
SENP3Q9H4L4 MIR376B-201ENST00000614515 100 ntBASIC9.13□□□□□ -0.95
SENP3Q9H4L4 5S_rRNA.28-201ENST00000638107 119 ntBASIC9.13□□□□□ -0.95
SENP3Q9H4L4 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC9.13□□□□□ -0.95
SENP3Q9H4L4 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC9.13□□□□□ -0.95
SENP3Q9H4L4 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC9.13□□□□□ -0.95
SENP3Q9H4L4 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC9.13□□□□□ -0.95
SENP3Q9H4L4 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC9.13□□□□□ -0.95
SENP3Q9H4L4 IL31RA-203ENST00000359040 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC9.12□□□□□ -0.95
SENP3Q9H4L4 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
SENP3Q9H4L4 ACSL5-203ENST00000356116 3353 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
SENP3Q9H4L4 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC9.12□□□□□ -0.95
SENP3Q9H4L4 ZNF107-206ENST00000620827 5685 ntAPPRIS P4 TSL 4 BASIC9.12□□□□□ -0.95
SENP3Q9H4L4 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
SENP3Q9H4L4 MYPN-201ENST00000354393 4596 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
SENP3Q9H4L4 DOCK11-201ENST00000276202 6625 ntAPPRIS P2 TSL 1 (best) BASIC9.12□□□□□ -0.95
SENP3Q9H4L4 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
SENP3Q9H4L4 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC9.12□□□□□ -0.95
SENP3Q9H4L4 LINC01372-201ENST00000430244 489 ntTSL 1 (best) BASIC9.12□□□□□ -0.95
SENP3Q9H4L4 RNU6-634P-201ENST00000459134 106 ntBASIC9.12□□□□□ -0.95
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms