Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 ART4-201ENST00000228936 5129 ntAPPRIS P2 TSL 1 (best) BASIC9.33□□□□□ -0.92
SENP3Q9H4L4 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
SENP3Q9H4L4 IFIT2-202ENST00000611722 3038 ntAPPRIS ALT2 TSL 5 BASIC9.33□□□□□ -0.92
SENP3Q9H4L4 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
SENP3Q9H4L4 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
SENP3Q9H4L4 RNU1-73P-201ENST00000383971 164 ntBASIC9.33□□□□□ -0.92
SENP3Q9H4L4 RN7SKP62-201ENST00000384539 329 ntBASIC9.33□□□□□ -0.92
SENP3Q9H4L4 RNU6-129P-201ENST00000391022 107 ntBASIC9.33□□□□□ -0.92
SENP3Q9H4L4 AC094019.1-201ENST00000434678 472 ntBASIC9.33□□□□□ -0.92
SENP3Q9H4L4 HMGN2P20-201ENST00000437531 273 ntBASIC9.33□□□□□ -0.92
SENP3Q9H4L4 SNRPGP13-201ENST00000442212 177 ntBASIC9.33□□□□□ -0.92
SENP3Q9H4L4 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC9.33□□□□□ -0.92
SENP3Q9H4L4 AC233702.7-202ENST00000582941 211 ntBASIC9.33□□□□□ -0.92
SENP3Q9H4L4 TSHZ2-203ENST00000603338 3803 ntTSL 2 BASIC9.33□□□□□ -0.92
SENP3Q9H4L4 AC096720.1-201ENST00000604441 183 ntBASIC9.33□□□□□ -0.92
SENP3Q9H4L4 AC103810.7-201ENST00000607821 91 ntBASIC9.33□□□□□ -0.92
SENP3Q9H4L4 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
SENP3Q9H4L4 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
SENP3Q9H4L4 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
SENP3Q9H4L4 POGZ-204ENST00000392723 6152 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
SENP3Q9H4L4 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
SENP3Q9H4L4 YES1-201ENST00000314574 4441 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
SENP3Q9H4L4 AC009948.5-201ENST00000624360 4406 ntBASIC9.33□□□□□ -0.92
SENP3Q9H4L4 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
SENP3Q9H4L4 PLXDC2-203ENST00000377252 12468 ntAPPRIS P1 TSL 1 (best) BASIC9.33□□□□□ -0.92
SENP3Q9H4L4 BRCA1-201ENST00000352993 3668 ntTSL 5 BASIC9.33□□□□□ -0.92
SENP3Q9H4L4 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC9.33□□□□□ -0.92
SENP3Q9H4L4 ENTPD5-207ENST00000557325 3096 ntTSL 2 BASIC9.33□□□□□ -0.92
SENP3Q9H4L4 DOCK2-211ENST00000520908 4654 ntTSL 2 BASIC9.32□□□□□ -0.92
SENP3Q9H4L4 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC9.32□□□□□ -0.92
SENP3Q9H4L4 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC9.32□□□□□ -0.92
SENP3Q9H4L4 CABYR-216ENST00000621648 2226 ntAPPRIS P4 TSL 1 (best) BASIC9.32□□□□□ -0.92
SENP3Q9H4L4 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC9.32□□□□□ -0.92
SENP3Q9H4L4 TSC1-203ENST00000440111 8463 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
SENP3Q9H4L4 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC9.32□□□□□ -0.92
SENP3Q9H4L4 TTLL5-207ENST00000554510 2624 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
SENP3Q9H4L4 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
SENP3Q9H4L4 SNORD115-37-201ENST00000363768 82 ntBASIC9.32□□□□□ -0.92
SENP3Q9H4L4 RNU6-499P-201ENST00000365615 107 ntBASIC9.32□□□□□ -0.92
SENP3Q9H4L4 AL139095.1-201ENST00000404326 391 ntBASIC9.32□□□□□ -0.92
SENP3Q9H4L4 RAB6C-AS1-202ENST00000433431 123 ntBASIC9.32□□□□□ -0.92
SENP3Q9H4L4 AC023141.3-201ENST00000436698 278 ntBASIC9.32□□□□□ -0.92
SENP3Q9H4L4 RPS4XP11-201ENST00000446897 772 ntBASIC9.32□□□□□ -0.92
SENP3Q9H4L4 HSPE1P18-201ENST00000517602 280 ntBASIC9.32□□□□□ -0.92
SENP3Q9H4L4 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC9.32□□□□□ -0.92
SENP3Q9H4L4 AC034105.4-201ENST00000568304 277 ntBASIC9.32□□□□□ -0.92
SENP3Q9H4L4 AP005431.1-201ENST00000618479 319 ntBASIC9.32□□□□□ -0.92
SENP3Q9H4L4 AL354718.1-201ENST00000619764 589 ntBASIC9.32□□□□□ -0.92
SENP3Q9H4L4 GOLGB1-209ENST00000614479 11115 ntAPPRIS ALT2 TSL 1 (best) BASIC9.32□□□□□ -0.92
SENP3Q9H4L4 CU633906.1-201ENST00000621924 2380 ntTSL 3 BASIC9.32□□□□□ -0.92
SENP3Q9H4L4 FUT10-206ENST00000518672 3115 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
SENP3Q9H4L4 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC9.32□□□□□ -0.92
SENP3Q9H4L4 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
SENP3Q9H4L4 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC9.32□□□□□ -0.92
SENP3Q9H4L4 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
SENP3Q9H4L4 AP000547.3-204ENST00000588548 2523 ntBASIC9.32□□□□□ -0.92
SENP3Q9H4L4 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC9.31□□□□□ -0.92
SENP3Q9H4L4 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC9.31□□□□□ -0.92
SENP3Q9H4L4 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC9.31□□□□□ -0.92
SENP3Q9H4L4 POLA1-201ENST00000379059 5440 ntAPPRIS P3 TSL 1 (best) BASIC9.31□□□□□ -0.92
SENP3Q9H4L4 POLA1-206ENST00000611764 5434 ntAPPRIS ALT2 TSL 5 BASIC9.31□□□□□ -0.92
SENP3Q9H4L4 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
SENP3Q9H4L4 ANKRD20A9P-201ENST00000457997 2978 ntBASIC9.31□□□□□ -0.92
SENP3Q9H4L4 PROX1-201ENST00000261454 8170 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
SENP3Q9H4L4 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
SENP3Q9H4L4 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC9.31□□□□□ -0.92
SENP3Q9H4L4 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC9.31□□□□□ -0.92
SENP3Q9H4L4 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
SENP3Q9H4L4 RNU6-117P-201ENST00000365415 107 ntBASIC9.31□□□□□ -0.92
SENP3Q9H4L4 MIR518F-201ENST00000384973 87 ntBASIC9.31□□□□□ -0.92
SENP3Q9H4L4 RPS21P8-201ENST00000413365 247 ntBASIC9.31□□□□□ -0.92
SENP3Q9H4L4 CYCSP48-201ENST00000417124 323 ntBASIC9.31□□□□□ -0.92
SENP3Q9H4L4 RPL21P50-201ENST00000417698 477 ntBASIC9.31□□□□□ -0.92
SENP3Q9H4L4 RNA5SP362-201ENST00000516048 118 ntBASIC9.31□□□□□ -0.92
SENP3Q9H4L4 RNU6-1015P-201ENST00000517121 99 ntBASIC9.31□□□□□ -0.92
SENP3Q9H4L4 RN7SL208P-201ENST00000577964 296 ntBASIC9.31□□□□□ -0.92
SENP3Q9H4L4 AC092266.1-201ENST00000610958 165 ntBASIC9.31□□□□□ -0.92
SENP3Q9H4L4 RN7SL787P-201ENST00000613000 284 ntBASIC9.31□□□□□ -0.92
SENP3Q9H4L4 KIDINS220-201ENST00000256707 7361 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
SENP3Q9H4L4 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC9.31□□□□□ -0.92
SENP3Q9H4L4 WDR89-202ENST00000394942 2993 ntAPPRIS P1 TSL 5 BASIC9.31□□□□□ -0.92
SENP3Q9H4L4 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
SENP3Q9H4L4 PSD3-220ENST00000615573 5843 ntTSL 5 BASIC9.31□□□□□ -0.92
SENP3Q9H4L4 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC9.31□□□□□ -0.92
SENP3Q9H4L4 ECT2-206ENST00000417960 4363 ntAPPRIS ALT1 TSL 1 (best) BASIC9.31□□□□□ -0.92
SENP3Q9H4L4 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
SENP3Q9H4L4 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC9.3□□□□□ -0.92
SENP3Q9H4L4 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
SENP3Q9H4L4 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC9.3□□□□□ -0.92
SENP3Q9H4L4 TMEM200A-203ENST00000545622 2918 ntAPPRIS P1 TSL 2 BASIC9.3□□□□□ -0.92
SENP3Q9H4L4 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
SENP3Q9H4L4 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC9.3□□□□□ -0.92
SENP3Q9H4L4 HMGN2P30-201ENST00000423237 256 ntBASIC9.3□□□□□ -0.92
SENP3Q9H4L4 RPS10P20-201ENST00000494130 463 ntBASIC9.3□□□□□ -0.92
SENP3Q9H4L4 ATP5LP3-201ENST00000514223 304 ntBASIC9.3□□□□□ -0.92
SENP3Q9H4L4 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC9.3□□□□□ -0.92
SENP3Q9H4L4 Six3os1_4.1-201ENST00000615706 324 ntBASIC9.3□□□□□ -0.92
SENP3Q9H4L4 AC012442.3-202ENST00000636742 206 ntBASIC9.3□□□□□ -0.92
SENP3Q9H4L4 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC9.3□□□□□ -0.92
SENP3Q9H4L4 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC9.3□□□□□ -0.92
Retrieved 100 of 98,524 protein–RNA pairs in 129.8 ms