Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.94□□□□□ -1.62
MSX1P28360 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC4.94□□□□□ -1.62
MSX1P28360 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
MSX1P28360 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
MSX1P28360 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
MSX1P28360 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.94□□□□□ -1.62
MSX1P28360 LINC01109-201ENST00000603837 3081 ntBASIC4.94□□□□□ -1.62
MSX1P28360 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.94□□□□□ -1.62
MSX1P28360 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC4.94□□□□□ -1.62
MSX1P28360 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.94□□□□□ -1.62
MSX1P28360 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.93□□□□□ -1.62
MSX1P28360 AC015813.6-201ENST00000624409 5808 ntBASIC4.93□□□□□ -1.62
MSX1P28360 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
MSX1P28360 Z95331.1-201ENST00000623075 23112 ntBASIC4.93□□□□□ -1.62
MSX1P28360 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
MSX1P28360 ALB-202ENST00000401494 1659 ntTSL 5 BASIC4.93□□□□□ -1.62
MSX1P28360 AC100757.1-201ENST00000616872 1835 ntBASIC4.93□□□□□ -1.62
MSX1P28360 MAPK10-328ENST00000641553 4009 ntBASIC4.93□□□□□ -1.62
MSX1P28360 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
MSX1P28360 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
MSX1P28360 U8.4-201ENST00000363626 134 ntBASIC4.93□□□□□ -1.62
MSX1P28360 Y_RNA.418-201ENST00000384029 102 ntBASIC4.93□□□□□ -1.62
MSX1P28360 RNU6-1289P-201ENST00000384431 106 ntBASIC4.93□□□□□ -1.62
MSX1P28360 RNU6-843P-201ENST00000384454 104 ntBASIC4.93□□□□□ -1.62
MSX1P28360 LAP3P1-201ENST00000403648 294 ntBASIC4.93□□□□□ -1.62
MSX1P28360 RPL37P18-201ENST00000411602 243 ntBASIC4.93□□□□□ -1.62
MSX1P28360 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.93□□□□□ -1.62
MSX1P28360 MTCO1P39-201ENST00000426148 480 ntBASIC4.93□□□□□ -1.62
MSX1P28360 AP000907.1-201ENST00000428428 510 ntBASIC4.93□□□□□ -1.62
MSX1P28360 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.93□□□□□ -1.62
MSX1P28360 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC4.93□□□□□ -1.62
MSX1P28360 AL772161.1-201ENST00000439130 476 ntBASIC4.93□□□□□ -1.62
MSX1P28360 AC007395.1-201ENST00000451333 677 ntBASIC4.93□□□□□ -1.62
MSX1P28360 AC091959.1-201ENST00000495857 238 ntBASIC4.93□□□□□ -1.62
MSX1P28360 SCARNA20.4-201ENST00000516969 131 ntBASIC4.93□□□□□ -1.62
MSX1P28360 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.93□□□□□ -1.62
MSX1P28360 HMGB1P40-201ENST00000525121 540 ntBASIC4.93□□□□□ -1.62
MSX1P28360 MIR4423-201ENST00000580922 80 ntBASIC4.93□□□□□ -1.62
MSX1P28360 AC010928.2-201ENST00000588017 287 ntBASIC4.93□□□□□ -1.62
MSX1P28360 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC4.93□□□□□ -1.62
MSX1P28360 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC4.93□□□□□ -1.62
MSX1P28360 AC126915.2-201ENST00000610957 190 ntBASIC4.93□□□□□ -1.62
MSX1P28360 AC073349.3-201ENST00000617616 186 ntBASIC4.93□□□□□ -1.62
MSX1P28360 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.93□□□□□ -1.62
MSX1P28360 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC4.93□□□□□ -1.62
MSX1P28360 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
MSX1P28360 AC233981.2-201ENST00000611524 1614 ntBASIC4.93□□□□□ -1.62
MSX1P28360 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
MSX1P28360 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
MSX1P28360 AC104964.3-201ENST00000606115 2860 ntBASIC4.93□□□□□ -1.62
MSX1P28360 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
MSX1P28360 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
MSX1P28360 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
MSX1P28360 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC4.92□□□□□ -1.62
MSX1P28360 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
MSX1P28360 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC4.92□□□□□ -1.62
MSX1P28360 AC093591.2-201ENST00000565254 3843 ntBASIC4.92□□□□□ -1.62
MSX1P28360 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
MSX1P28360 AC073136.1-201ENST00000449426 2884 ntBASIC4.92□□□□□ -1.62
MSX1P28360 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
MSX1P28360 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.92□□□□□ -1.62
MSX1P28360 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.92□□□□□ -1.62
MSX1P28360 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC4.92□□□□□ -1.62
MSX1P28360 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
MSX1P28360 RNA5SP335-201ENST00000363817 110 ntBASIC4.92□□□□□ -1.62
MSX1P28360 RNU6-879P-201ENST00000364328 108 ntBASIC4.92□□□□□ -1.62
MSX1P28360 Y_RNA.343-201ENST00000365354 112 ntBASIC4.92□□□□□ -1.62
MSX1P28360 SNORA51.8-201ENST00000384234 132 ntBASIC4.92□□□□□ -1.62
MSX1P28360 RNU6-17P-201ENST00000384245 107 ntBASIC4.92□□□□□ -1.62
MSX1P28360 Y_RNA.497-201ENST00000384447 98 ntBASIC4.92□□□□□ -1.62
MSX1P28360 RNU6-18P-201ENST00000384527 107 ntBASIC4.92□□□□□ -1.62
MSX1P28360 SNORA22C-201ENST00000384614 134 ntBASIC4.92□□□□□ -1.62
MSX1P28360 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
MSX1P28360 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
MSX1P28360 MIR550A3-201ENST00000390735 95 ntBASIC4.92□□□□□ -1.62
MSX1P28360 Y_RNA.580-201ENST00000391004 95 ntBASIC4.92□□□□□ -1.62
MSX1P28360 SNORA48.4-201ENST00000391089 134 ntBASIC4.92□□□□□ -1.62
MSX1P28360 BTF3L4P2-201ENST00000392798 346 ntBASIC4.92□□□□□ -1.62
MSX1P28360 RPS4XP3-201ENST00000398541 413 ntBASIC4.92□□□□□ -1.62
MSX1P28360 AL645733.1-201ENST00000402250 217 ntBASIC4.92□□□□□ -1.62
MSX1P28360 RPS15AP7-201ENST00000439294 405 ntBASIC4.92□□□□□ -1.62
MSX1P28360 CEACAMP7-201ENST00000444105 496 ntBASIC4.92□□□□□ -1.62
MSX1P28360 FABP5P15-201ENST00000453566 214 ntBASIC4.92□□□□□ -1.62
MSX1P28360 AC073901.1-201ENST00000462471 408 ntBASIC4.92□□□□□ -1.62
MSX1P28360 AP001025.1-201ENST00000486139 332 ntBASIC4.92□□□□□ -1.62
MSX1P28360 RN7SL591P-201ENST00000496150 292 ntBASIC4.92□□□□□ -1.62
MSX1P28360 RNY3P16-201ENST00000516338 101 ntBASIC4.92□□□□□ -1.62
MSX1P28360 SNORA27.4-201ENST00000516650 95 ntBASIC4.92□□□□□ -1.62
MSX1P28360 RNU7-110P-201ENST00000516891 62 ntBASIC4.92□□□□□ -1.62
MSX1P28360 AC021006.3-201ENST00000530771 192 ntBASIC4.92□□□□□ -1.62
MSX1P28360 AC126177.5-201ENST00000549599 178 ntBASIC4.92□□□□□ -1.62
MSX1P28360 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC4.92□□□□□ -1.62
MSX1P28360 MIR4308-201ENST00000580634 81 ntBASIC4.92□□□□□ -1.62
MSX1P28360 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC4.92□□□□□ -1.62
MSX1P28360 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC4.92□□□□□ -1.62
MSX1P28360 AL049539.1-201ENST00000611964 459 ntBASIC4.92□□□□□ -1.62
MSX1P28360 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC4.92□□□□□ -1.62
MSX1P28360 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
MSX1P28360 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.92□□□□□ -1.62
MSX1P28360 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.92□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms