Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC21.92■■□□□ 1.1
DDX41Q9UJV9 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC21.92■■□□□ 1.1
DDX41Q9UJV9 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
DDX41Q9UJV9 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC21.92■■□□□ 1.1
DDX41Q9UJV9 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
DDX41Q9UJV9 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC21.92■■□□□ 1.1
DDX41Q9UJV9 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC21.92■■□□□ 1.1
DDX41Q9UJV9 AL445228.2-201ENST00000605589 952 ntBASIC21.92■■□□□ 1.1
DDX41Q9UJV9 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
DDX41Q9UJV9 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC21.92■■□□□ 1.1
DDX41Q9UJV9 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
DDX41Q9UJV9 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
DDX41Q9UJV9 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
DDX41Q9UJV9 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC21.92■■□□□ 1.1
DDX41Q9UJV9 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
DDX41Q9UJV9 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
DDX41Q9UJV9 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
DDX41Q9UJV9 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
DDX41Q9UJV9 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
DDX41Q9UJV9 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
DDX41Q9UJV9 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
DDX41Q9UJV9 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
DDX41Q9UJV9 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
DDX41Q9UJV9 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
DDX41Q9UJV9 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
DDX41Q9UJV9 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
DDX41Q9UJV9 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
DDX41Q9UJV9 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
DDX41Q9UJV9 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC21.91■■□□□ 1.1
DDX41Q9UJV9 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC21.91■■□□□ 1.1
DDX41Q9UJV9 AC091390.4-202ENST00000476426 537 ntBASIC21.91■■□□□ 1.1
DDX41Q9UJV9 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
DDX41Q9UJV9 CFL2-205ENST00000555765 632 ntTSL 2 BASIC21.91■■□□□ 1.1
DDX41Q9UJV9 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC21.91■■□□□ 1.1
DDX41Q9UJV9 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
DDX41Q9UJV9 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC21.91■■□□□ 1.1
DDX41Q9UJV9 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
DDX41Q9UJV9 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
DDX41Q9UJV9 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
DDX41Q9UJV9 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
DDX41Q9UJV9 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
DDX41Q9UJV9 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
DDX41Q9UJV9 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
DDX41Q9UJV9 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC21.9■■□□□ 1.1
DDX41Q9UJV9 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
DDX41Q9UJV9 INGX-201ENST00000359239 846 ntBASIC21.9■■□□□ 1.1
DDX41Q9UJV9 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC21.9■■□□□ 1.1
DDX41Q9UJV9 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
DDX41Q9UJV9 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC21.9■■□□□ 1.1
DDX41Q9UJV9 FAM207BP-201ENST00000447172 505 ntBASIC21.9■■□□□ 1.1
DDX41Q9UJV9 ECEL1P2-202ENST00000465689 757 ntBASIC21.9■■□□□ 1.1
DDX41Q9UJV9 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC21.9■■□□□ 1.1
DDX41Q9UJV9 AC010203.1-204ENST00000548782 407 ntBASIC21.9■■□□□ 1.1
DDX41Q9UJV9 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC21.9■■□□□ 1.1
DDX41Q9UJV9 AL049597.2-201ENST00000565575 961 ntBASIC21.9■■□□□ 1.1
DDX41Q9UJV9 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC21.9■■□□□ 1.1
DDX41Q9UJV9 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC21.9■■□□□ 1.1
DDX41Q9UJV9 CLN6-221ENST00000637494 765 ntTSL 5 BASIC21.9■■□□□ 1.1
DDX41Q9UJV9 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
DDX41Q9UJV9 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
DDX41Q9UJV9 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC21.9■■□□□ 1.1
DDX41Q9UJV9 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC21.9■■□□□ 1.1
DDX41Q9UJV9 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
DDX41Q9UJV9 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC21.89■■□□□ 1.1
DDX41Q9UJV9 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC21.89■■□□□ 1.1
DDX41Q9UJV9 AC096733.2-201ENST00000609937 1394 ntBASIC21.89■■□□□ 1.1
DDX41Q9UJV9 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
DDX41Q9UJV9 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
DDX41Q9UJV9 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
DDX41Q9UJV9 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
DDX41Q9UJV9 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.09
DDX41Q9UJV9 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
DDX41Q9UJV9 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC21.89■■□□□ 1.09
DDX41Q9UJV9 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC21.89■■□□□ 1.09
DDX41Q9UJV9 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC21.89■■□□□ 1.09
DDX41Q9UJV9 AL160286.2-201ENST00000567150 934 ntBASIC21.89■■□□□ 1.09
DDX41Q9UJV9 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
DDX41Q9UJV9 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
DDX41Q9UJV9 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
DDX41Q9UJV9 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
DDX41Q9UJV9 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
DDX41Q9UJV9 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
DDX41Q9UJV9 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC21.88■■□□□ 1.09
DDX41Q9UJV9 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
DDX41Q9UJV9 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC21.88■■□□□ 1.09
DDX41Q9UJV9 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
DDX41Q9UJV9 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
DDX41Q9UJV9 AC009237.14-201ENST00000609975 1594 ntBASIC21.88■■□□□ 1.09
DDX41Q9UJV9 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
DDX41Q9UJV9 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
DDX41Q9UJV9 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC21.88■■□□□ 1.09
DDX41Q9UJV9 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC21.88■■□□□ 1.09
DDX41Q9UJV9 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC21.88■■□□□ 1.09
DDX41Q9UJV9 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC21.88■■□□□ 1.09
DDX41Q9UJV9 KRT18P35-201ENST00000510488 1269 ntBASIC21.88■■□□□ 1.09
DDX41Q9UJV9 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
DDX41Q9UJV9 RBM42-202ENST00000586618 771 ntTSL 3 BASIC21.88■■□□□ 1.09
DDX41Q9UJV9 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
DDX41Q9UJV9 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC21.88■■□□□ 1.09
DDX41Q9UJV9 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms