Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
LHX3Q9UBR4 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LHX3Q9UBR4 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.23■□□□□ 0.67
LHX3Q9UBR4 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC19.23■□□□□ 0.67
LHX3Q9UBR4 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.23■□□□□ 0.67
LHX3Q9UBR4 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.23■□□□□ 0.67
LHX3Q9UBR4 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LHX3Q9UBR4 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC19.23■□□□□ 0.67
LHX3Q9UBR4 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LHX3Q9UBR4 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
LHX3Q9UBR4 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
LHX3Q9UBR4 AC007663.1-201ENST00000438948 1240 ntBASIC19.23■□□□□ 0.67
LHX3Q9UBR4 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.23■□□□□ 0.67
LHX3Q9UBR4 CCR12P-201ENST00000446203 998 ntBASIC19.23■□□□□ 0.67
LHX3Q9UBR4 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.23■□□□□ 0.67
LHX3Q9UBR4 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.23■□□□□ 0.67
LHX3Q9UBR4 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC19.23■□□□□ 0.67
LHX3Q9UBR4 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.23■□□□□ 0.67
LHX3Q9UBR4 AL353719.1-201ENST00000566847 864 ntBASIC19.23■□□□□ 0.67
LHX3Q9UBR4 FAM87A-204ENST00000613235 858 ntBASIC19.23■□□□□ 0.67
LHX3Q9UBR4 AC116562.4-202ENST00000641738 218 ntBASIC19.23■□□□□ 0.67
LHX3Q9UBR4 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LHX3Q9UBR4 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.23■□□□□ 0.67
LHX3Q9UBR4 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
LHX3Q9UBR4 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
LHX3Q9UBR4 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LHX3Q9UBR4 KRT18P22-201ENST00000402024 1347 ntBASIC19.23■□□□□ 0.67
LHX3Q9UBR4 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.22■□□□□ 0.67
LHX3Q9UBR4 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LHX3Q9UBR4 AL161938.1-201ENST00000569833 2180 ntBASIC19.22■□□□□ 0.67
LHX3Q9UBR4 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LHX3Q9UBR4 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
LHX3Q9UBR4 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
LHX3Q9UBR4 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LHX3Q9UBR4 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.22■□□□□ 0.67
LHX3Q9UBR4 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
LHX3Q9UBR4 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC19.22■□□□□ 0.67
LHX3Q9UBR4 AC008622.2-201ENST00000617006 1229 ntBASIC19.22■□□□□ 0.67
LHX3Q9UBR4 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
LHX3Q9UBR4 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
LHX3Q9UBR4 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LHX3Q9UBR4 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.22■□□□□ 0.67
LHX3Q9UBR4 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LHX3Q9UBR4 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
LHX3Q9UBR4 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LHX3Q9UBR4 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC19.22■□□□□ 0.67
LHX3Q9UBR4 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
LHX3Q9UBR4 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LHX3Q9UBR4 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
LHX3Q9UBR4 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LHX3Q9UBR4 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
LHX3Q9UBR4 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LHX3Q9UBR4 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.21■□□□□ 0.67
LHX3Q9UBR4 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.21■□□□□ 0.67
LHX3Q9UBR4 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.21■□□□□ 0.67
LHX3Q9UBR4 TSPY17P-201ENST00000450329 467 ntBASIC19.21■□□□□ 0.67
LHX3Q9UBR4 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
LHX3Q9UBR4 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.21■□□□□ 0.67
LHX3Q9UBR4 KRT8P3-201ENST00000519669 1449 ntBASIC19.21■□□□□ 0.67
LHX3Q9UBR4 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.21■□□□□ 0.67
LHX3Q9UBR4 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LHX3Q9UBR4 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC19.21■□□□□ 0.67
LHX3Q9UBR4 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.21■□□□□ 0.67
LHX3Q9UBR4 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC19.21■□□□□ 0.67
LHX3Q9UBR4 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LHX3Q9UBR4 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LHX3Q9UBR4 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LHX3Q9UBR4 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
LHX3Q9UBR4 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LHX3Q9UBR4 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LHX3Q9UBR4 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.21■□□□□ 0.67
LHX3Q9UBR4 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LHX3Q9UBR4 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LHX3Q9UBR4 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LHX3Q9UBR4 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LHX3Q9UBR4 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LHX3Q9UBR4 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.2■□□□□ 0.66
LHX3Q9UBR4 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LHX3Q9UBR4 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
LHX3Q9UBR4 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.2■□□□□ 0.66
LHX3Q9UBR4 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC19.2■□□□□ 0.66
LHX3Q9UBR4 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
LHX3Q9UBR4 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LHX3Q9UBR4 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.2■□□□□ 0.66
LHX3Q9UBR4 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC19.2■□□□□ 0.66
LHX3Q9UBR4 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC19.2■□□□□ 0.66
LHX3Q9UBR4 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.2■□□□□ 0.66
LHX3Q9UBR4 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC19.2■□□□□ 0.66
LHX3Q9UBR4 AC128688.1-201ENST00000487626 519 ntBASIC19.2■□□□□ 0.66
LHX3Q9UBR4 AP003041.3-201ENST00000527151 707 ntBASIC19.2■□□□□ 0.66
LHX3Q9UBR4 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.2■□□□□ 0.66
LHX3Q9UBR4 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC19.2■□□□□ 0.66
LHX3Q9UBR4 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC19.2■□□□□ 0.66
LHX3Q9UBR4 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LHX3Q9UBR4 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LHX3Q9UBR4 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
LHX3Q9UBR4 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LHX3Q9UBR4 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC19.2■□□□□ 0.66
LHX3Q9UBR4 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LHX3Q9UBR4 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms