Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.64■□□□□ 0.73
TDP1Q9NUW8 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC19.64■□□□□ 0.73
TDP1Q9NUW8 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.64■□□□□ 0.73
TDP1Q9NUW8 METTL23-204ENST00000586752 904 ntTSL 2 BASIC19.64■□□□□ 0.73
TDP1Q9NUW8 AC116407.4-201ENST00000623319 1061 ntBASIC19.64■□□□□ 0.73
TDP1Q9NUW8 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.64■□□□□ 0.73
TDP1Q9NUW8 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC19.64■□□□□ 0.73
TDP1Q9NUW8 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TDP1Q9NUW8 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.64■□□□□ 0.73
TDP1Q9NUW8 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TDP1Q9NUW8 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC19.64■□□□□ 0.73
TDP1Q9NUW8 GPAT2P1-201ENST00000444924 1672 ntBASIC19.64■□□□□ 0.73
TDP1Q9NUW8 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
TDP1Q9NUW8 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.73
TDP1Q9NUW8 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TDP1Q9NUW8 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.64■□□□□ 0.73
TDP1Q9NUW8 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
TDP1Q9NUW8 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.64■□□□□ 0.73
TDP1Q9NUW8 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.64■□□□□ 0.73
TDP1Q9NUW8 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TDP1Q9NUW8 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.64■□□□□ 0.73
TDP1Q9NUW8 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 BET1L-202ENST00000332865 533 ntTSL 5 BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 LY6E-213ENST00000522528 606 ntTSL 3 BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 CD81-212ENST00000526072 1172 ntTSL 5 BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 AL136038.3-201ENST00000561909 1096 ntBASIC19.63■□□□□ 0.73
TDP1Q9NUW8 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TDP1Q9NUW8 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.62■□□□□ 0.73
TDP1Q9NUW8 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC19.62■□□□□ 0.73
TDP1Q9NUW8 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.62■□□□□ 0.73
TDP1Q9NUW8 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TDP1Q9NUW8 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
TDP1Q9NUW8 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TDP1Q9NUW8 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TDP1Q9NUW8 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TDP1Q9NUW8 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TDP1Q9NUW8 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.62■□□□□ 0.73
TDP1Q9NUW8 VENTXP5-201ENST00000523979 775 ntBASIC19.62■□□□□ 0.73
TDP1Q9NUW8 ZNF444P1-201ENST00000559497 298 ntBASIC19.62■□□□□ 0.73
TDP1Q9NUW8 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC19.62■□□□□ 0.73
TDP1Q9NUW8 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC19.62■□□□□ 0.73
TDP1Q9NUW8 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.62■□□□□ 0.73
TDP1Q9NUW8 HYMAI.1-201ENST00000620949 238 ntBASIC19.62■□□□□ 0.73
TDP1Q9NUW8 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC19.62■□□□□ 0.73
TDP1Q9NUW8 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.62■□□□□ 0.73
TDP1Q9NUW8 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TDP1Q9NUW8 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TDP1Q9NUW8 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
TDP1Q9NUW8 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TDP1Q9NUW8 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TDP1Q9NUW8 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.62■□□□□ 0.73
TDP1Q9NUW8 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TDP1Q9NUW8 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
TDP1Q9NUW8 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TDP1Q9NUW8 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC19.61■□□□□ 0.73
TDP1Q9NUW8 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
TDP1Q9NUW8 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.61■□□□□ 0.73
TDP1Q9NUW8 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
TDP1Q9NUW8 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.61■□□□□ 0.73
TDP1Q9NUW8 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TDP1Q9NUW8 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TDP1Q9NUW8 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
TDP1Q9NUW8 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC19.61■□□□□ 0.73
TDP1Q9NUW8 PTK2-216ENST00000519881 863 ntTSL 3 BASIC19.61■□□□□ 0.73
TDP1Q9NUW8 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC19.61■□□□□ 0.73
TDP1Q9NUW8 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC19.61■□□□□ 0.73
TDP1Q9NUW8 AC083849.1-201ENST00000615227 514 ntBASIC19.61■□□□□ 0.73
TDP1Q9NUW8 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC19.61■□□□□ 0.73
TDP1Q9NUW8 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.61■□□□□ 0.73
TDP1Q9NUW8 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TDP1Q9NUW8 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
TDP1Q9NUW8 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TDP1Q9NUW8 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.61■□□□□ 0.73
TDP1Q9NUW8 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
TDP1Q9NUW8 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TDP1Q9NUW8 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms