Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
DDX28Q9NUL7 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DDX28Q9NUL7 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.44■□□□□ 0.38
DDX28Q9NUL7 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
DDX28Q9NUL7 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
DDX28Q9NUL7 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
DDX28Q9NUL7 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DDX28Q9NUL7 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DDX28Q9NUL7 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DDX28Q9NUL7 AL390961.4-201ENST00000623958 2535 ntBASIC17.44■□□□□ 0.38
DDX28Q9NUL7 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DDX28Q9NUL7 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
DDX28Q9NUL7 PWWP2AP1-201ENST00000429776 2273 ntBASIC17.44■□□□□ 0.38
DDX28Q9NUL7 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
DDX28Q9NUL7 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
DDX28Q9NUL7 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 AC009237.14-201ENST00000609975 1594 ntBASIC17.43■□□□□ 0.38
DDX28Q9NUL7 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
DDX28Q9NUL7 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
DDX28Q9NUL7 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC17.42■□□□□ 0.38
DDX28Q9NUL7 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.42■□□□□ 0.38
DDX28Q9NUL7 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC17.42■□□□□ 0.38
DDX28Q9NUL7 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
DDX28Q9NUL7 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
DDX28Q9NUL7 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
DDX28Q9NUL7 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
DDX28Q9NUL7 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
DDX28Q9NUL7 MIR663A-201ENST00000385250 93 ntBASIC17.42■□□□□ 0.38
DDX28Q9NUL7 LSM12P1-201ENST00000411836 588 ntBASIC17.42■□□□□ 0.38
DDX28Q9NUL7 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
DDX28Q9NUL7 NCF1B-203ENST00000435988 1254 ntBASIC17.42■□□□□ 0.38
DDX28Q9NUL7 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC17.42■□□□□ 0.38
DDX28Q9NUL7 AF201337.1-201ENST00000520239 748 ntBASIC17.42■□□□□ 0.38
DDX28Q9NUL7 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
DDX28Q9NUL7 MARS-234ENST00000630571 216 ntTSL 5 BASIC17.42■□□□□ 0.38
DDX28Q9NUL7 MARS-235ENST00000630803 183 ntTSL 3 BASIC17.42■□□□□ 0.38
DDX28Q9NUL7 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
DDX28Q9NUL7 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
DDX28Q9NUL7 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC17.42■□□□□ 0.38
DDX28Q9NUL7 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC17.42■□□□□ 0.38
DDX28Q9NUL7 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
DDX28Q9NUL7 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC17.42■□□□□ 0.38
DDX28Q9NUL7 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
DDX28Q9NUL7 MKRN4P-201ENST00000444706 1521 ntBASIC17.42■□□□□ 0.38
DDX28Q9NUL7 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
DDX28Q9NUL7 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
DDX28Q9NUL7 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.41■□□□□ 0.38
DDX28Q9NUL7 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
DDX28Q9NUL7 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
DDX28Q9NUL7 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
DDX28Q9NUL7 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
DDX28Q9NUL7 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
DDX28Q9NUL7 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
DDX28Q9NUL7 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
DDX28Q9NUL7 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
DDX28Q9NUL7 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC17.41■□□□□ 0.38
DDX28Q9NUL7 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.41■□□□□ 0.38
DDX28Q9NUL7 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
DDX28Q9NUL7 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC17.41■□□□□ 0.38
DDX28Q9NUL7 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC17.41■□□□□ 0.38
DDX28Q9NUL7 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC17.41■□□□□ 0.38
DDX28Q9NUL7 AC105036.2-201ENST00000569468 176 ntBASIC17.41■□□□□ 0.38
DDX28Q9NUL7 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
DDX28Q9NUL7 POLI-202ENST00000406285 2030 ntTSL 2 BASIC17.41■□□□□ 0.38
DDX28Q9NUL7 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
DDX28Q9NUL7 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC17.41■□□□□ 0.38
DDX28Q9NUL7 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
DDX28Q9NUL7 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
DDX28Q9NUL7 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
DDX28Q9NUL7 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.41■□□□□ 0.38
DDX28Q9NUL7 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms