Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM56Q9BRZ2 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 UNC93B5-201ENST00000530315 699 ntBASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 TMEM191A-211ENST00000637163 1067 ntBASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 IRX1P1-201ENST00000438849 1838 ntBASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM56Q9BRZ2 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 AC020763.4-201ENST00000623414 4170 ntBASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM56Q9BRZ2 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM56Q9BRZ2 TUBB8P6-201ENST00000436895 1288 ntBASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms