Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SPENQ96T58 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SPENQ96T58 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SPENQ96T58 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SPENQ96T58 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.22■□□□□ 0.35
SPENQ96T58 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.22■□□□□ 0.35
SPENQ96T58 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
SPENQ96T58 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SPENQ96T58 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SPENQ96T58 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC17.21■□□□□ 0.35
SPENQ96T58 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SPENQ96T58 AC099778.1-201ENST00000568593 1911 ntBASIC17.21■□□□□ 0.35
SPENQ96T58 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SPENQ96T58 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SPENQ96T58 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SPENQ96T58 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SPENQ96T58 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.21■□□□□ 0.35
SPENQ96T58 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC17.21■□□□□ 0.35
SPENQ96T58 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.21■□□□□ 0.35
SPENQ96T58 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SPENQ96T58 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SPENQ96T58 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
SPENQ96T58 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SPENQ96T58 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.21■□□□□ 0.35
SPENQ96T58 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.21■□□□□ 0.35
SPENQ96T58 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.21■□□□□ 0.35
SPENQ96T58 PWWP2AP1-201ENST00000429776 2273 ntBASIC17.21■□□□□ 0.35
SPENQ96T58 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
SPENQ96T58 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
SPENQ96T58 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
SPENQ96T58 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC17.21■□□□□ 0.34
SPENQ96T58 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.34
SPENQ96T58 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SPENQ96T58 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SPENQ96T58 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SPENQ96T58 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.2■□□□□ 0.34
SPENQ96T58 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SPENQ96T58 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SPENQ96T58 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SPENQ96T58 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC17.2■□□□□ 0.34
SPENQ96T58 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SPENQ96T58 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.2■□□□□ 0.34
SPENQ96T58 TOB2P1-201ENST00000469761 992 ntBASIC17.2■□□□□ 0.34
SPENQ96T58 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SPENQ96T58 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SPENQ96T58 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
SPENQ96T58 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SPENQ96T58 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.2■□□□□ 0.34
SPENQ96T58 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
SPENQ96T58 TSPY19P-201ENST00000418461 509 ntBASIC17.2■□□□□ 0.34
SPENQ96T58 TSPY18P-201ENST00000441642 509 ntBASIC17.2■□□□□ 0.34
SPENQ96T58 SEC1P-202ENST00000473944 940 ntBASIC17.2■□□□□ 0.34
SPENQ96T58 KRT18P31-201ENST00000506277 1292 ntBASIC17.2■□□□□ 0.34
SPENQ96T58 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SPENQ96T58 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SPENQ96T58 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SPENQ96T58 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
SPENQ96T58 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC17.2■□□□□ 0.34
SPENQ96T58 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SPENQ96T58 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SPENQ96T58 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SPENQ96T58 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
SPENQ96T58 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SPENQ96T58 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SPENQ96T58 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.19■□□□□ 0.34
SPENQ96T58 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
SPENQ96T58 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.19■□□□□ 0.34
SPENQ96T58 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC17.19■□□□□ 0.34
SPENQ96T58 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC17.19■□□□□ 0.34
SPENQ96T58 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SPENQ96T58 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
SPENQ96T58 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SPENQ96T58 AC125437.2-201ENST00000625180 2167 ntBASIC17.19■□□□□ 0.34
SPENQ96T58 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.19■□□□□ 0.34
SPENQ96T58 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SPENQ96T58 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SPENQ96T58 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SPENQ96T58 AP000593.1-201ENST00000393668 712 ntBASIC17.19■□□□□ 0.34
SPENQ96T58 AC079781.3-201ENST00000449110 356 ntBASIC17.19■□□□□ 0.34
SPENQ96T58 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC17.19■□□□□ 0.34
SPENQ96T58 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SPENQ96T58 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
SPENQ96T58 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SPENQ96T58 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SPENQ96T58 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC17.19■□□□□ 0.34
SPENQ96T58 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
SPENQ96T58 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
SPENQ96T58 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.19■□□□□ 0.34
SPENQ96T58 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC17.19■□□□□ 0.34
SPENQ96T58 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SPENQ96T58 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC17.19■□□□□ 0.34
SPENQ96T58 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SPENQ96T58 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
SPENQ96T58 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
SPENQ96T58 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SPENQ96T58 AC140113.3-201ENST00000605663 199 ntBASIC17.18■□□□□ 0.34
SPENQ96T58 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.18■□□□□ 0.34
SPENQ96T58 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
SPENQ96T58 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SPENQ96T58 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms