Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS35Q96QK1 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS35Q96QK1 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS35Q96QK1 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS35Q96QK1 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS35Q96QK1 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS35Q96QK1 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.94■□□□□ 0.62
VPS35Q96QK1 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.93■□□□□ 0.62
VPS35Q96QK1 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS35Q96QK1 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS35Q96QK1 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS35Q96QK1 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.93■□□□□ 0.62
VPS35Q96QK1 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
VPS35Q96QK1 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS35Q96QK1 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
VPS35Q96QK1 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.93■□□□□ 0.62
VPS35Q96QK1 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS35Q96QK1 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS35Q96QK1 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS35Q96QK1 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS35Q96QK1 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS35Q96QK1 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.93■□□□□ 0.62
VPS35Q96QK1 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS35Q96QK1 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
VPS35Q96QK1 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS35Q96QK1 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS35Q96QK1 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
VPS35Q96QK1 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS35Q96QK1 AC005332.7-201ENST00000614046 2005 ntBASIC18.93■□□□□ 0.62
VPS35Q96QK1 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
VPS35Q96QK1 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS35Q96QK1 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS35Q96QK1 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS35Q96QK1 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS35Q96QK1 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.92■□□□□ 0.62
VPS35Q96QK1 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS35Q96QK1 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS35Q96QK1 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
VPS35Q96QK1 MMP23A-201ENST00000234610 1017 ntBASIC18.92■□□□□ 0.62
VPS35Q96QK1 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS35Q96QK1 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS35Q96QK1 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS35Q96QK1 MIR1238-201ENST00000408483 83 ntBASIC18.92■□□□□ 0.62
VPS35Q96QK1 CRYGFP-201ENST00000418459 633 ntBASIC18.92■□□□□ 0.62
VPS35Q96QK1 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS35Q96QK1 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS35Q96QK1 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS35Q96QK1 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.92■□□□□ 0.62
VPS35Q96QK1 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS35Q96QK1 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS35Q96QK1 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS35Q96QK1 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.92■□□□□ 0.62
VPS35Q96QK1 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS35Q96QK1 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.92■□□□□ 0.62
VPS35Q96QK1 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
VPS35Q96QK1 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS35Q96QK1 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS35Q96QK1 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS35Q96QK1 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.92■□□□□ 0.62
VPS35Q96QK1 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS35Q96QK1 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.91■□□□□ 0.62
VPS35Q96QK1 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS35Q96QK1 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS35Q96QK1 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS35Q96QK1 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS35Q96QK1 AC138932.1-201ENST00000534164 6830 ntBASIC18.91■□□□□ 0.62
VPS35Q96QK1 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS35Q96QK1 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS35Q96QK1 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS35Q96QK1 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
VPS35Q96QK1 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.91■□□□□ 0.62
VPS35Q96QK1 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS35Q96QK1 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VPS35Q96QK1 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VPS35Q96QK1 FDX2-206ENST00000492239 773 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS35Q96QK1 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VPS35Q96QK1 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS35Q96QK1 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS35Q96QK1 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.91■□□□□ 0.62
VPS35Q96QK1 AC073912.3-201ENST00000624414 853 ntBASIC18.91■□□□□ 0.62
VPS35Q96QK1 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS35Q96QK1 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS35Q96QK1 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS35Q96QK1 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS35Q96QK1 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
VPS35Q96QK1 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
VPS35Q96QK1 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VPS35Q96QK1 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS35Q96QK1 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS35Q96QK1 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VPS35Q96QK1 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS35Q96QK1 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS35Q96QK1 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS35Q96QK1 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS35Q96QK1 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
VPS35Q96QK1 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.9■□□□□ 0.62
VPS35Q96QK1 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS35Q96QK1 AL390955.1-201ENST00000428694 934 ntBASIC18.9■□□□□ 0.62
VPS35Q96QK1 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS35Q96QK1 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms