Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
ATG4AQ8WYN0 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
ATG4AQ8WYN0 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.78■□□□□ 0.76
ATG4AQ8WYN0 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.78■□□□□ 0.76
ATG4AQ8WYN0 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATG4AQ8WYN0 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATG4AQ8WYN0 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATG4AQ8WYN0 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
ATG4AQ8WYN0 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATG4AQ8WYN0 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATG4AQ8WYN0 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC19.78■□□□□ 0.76
ATG4AQ8WYN0 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
ATG4AQ8WYN0 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.78■□□□□ 0.76
ATG4AQ8WYN0 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATG4AQ8WYN0 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATG4AQ8WYN0 AC092666.2-201ENST00000613287 246 ntBASIC19.78■□□□□ 0.76
ATG4AQ8WYN0 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATG4AQ8WYN0 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
ATG4AQ8WYN0 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.78■□□□□ 0.76
ATG4AQ8WYN0 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
ATG4AQ8WYN0 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
ATG4AQ8WYN0 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
ATG4AQ8WYN0 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ATG4AQ8WYN0 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.78■□□□□ 0.76
ATG4AQ8WYN0 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
ATG4AQ8WYN0 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC19.78■□□□□ 0.76
ATG4AQ8WYN0 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
ATG4AQ8WYN0 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.77■□□□□ 0.76
ATG4AQ8WYN0 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ATG4AQ8WYN0 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ATG4AQ8WYN0 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ATG4AQ8WYN0 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ATG4AQ8WYN0 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
ATG4AQ8WYN0 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.77■□□□□ 0.76
ATG4AQ8WYN0 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ATG4AQ8WYN0 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ATG4AQ8WYN0 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC19.77■□□□□ 0.76
ATG4AQ8WYN0 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ATG4AQ8WYN0 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ATG4AQ8WYN0 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ATG4AQ8WYN0 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
ATG4AQ8WYN0 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.77■□□□□ 0.76
ATG4AQ8WYN0 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ATG4AQ8WYN0 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ATG4AQ8WYN0 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 AC090164.3-201ENST00000610780 2143 ntBASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 POM121L13P-201ENST00000422362 380 ntBASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
ATG4AQ8WYN0 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.75■□□□□ 0.75
ATG4AQ8WYN0 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ATG4AQ8WYN0 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ATG4AQ8WYN0 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ATG4AQ8WYN0 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ATG4AQ8WYN0 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
ATG4AQ8WYN0 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
ATG4AQ8WYN0 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ATG4AQ8WYN0 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC19.75■□□□□ 0.75
ATG4AQ8WYN0 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ATG4AQ8WYN0 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC19.75■□□□□ 0.75
ATG4AQ8WYN0 AC090192.1-201ENST00000517740 490 ntBASIC19.75■□□□□ 0.75
ATG4AQ8WYN0 UNC93B5-201ENST00000530315 699 ntBASIC19.75■□□□□ 0.75
ATG4AQ8WYN0 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.75■□□□□ 0.75
ATG4AQ8WYN0 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC19.75■□□□□ 0.75
ATG4AQ8WYN0 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ATG4AQ8WYN0 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.75■□□□□ 0.75
ATG4AQ8WYN0 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.75■□□□□ 0.75
ATG4AQ8WYN0 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC19.75■□□□□ 0.75
ATG4AQ8WYN0 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.75■□□□□ 0.75
ATG4AQ8WYN0 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.75■□□□□ 0.75
ATG4AQ8WYN0 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ATG4AQ8WYN0 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms