Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLHC1Q8NHS4 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 UNC93B5-201ENST00000530315 699 ntBASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLHC1Q8NHS4 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 RNA5SP413-201ENST00000516373 109 ntBASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.3■□□□□ 0.52
CLHC1Q8NHS4 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLHC1Q8NHS4 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CLHC1Q8NHS4 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLHC1Q8NHS4 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLHC1Q8NHS4 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CLHC1Q8NHS4 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.29■□□□□ 0.52
CLHC1Q8NHS4 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLHC1Q8NHS4 AC007613.1-201ENST00000572811 2597 ntBASIC18.29■□□□□ 0.52
CLHC1Q8NHS4 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLHC1Q8NHS4 HCG11-201ENST00000411553 5696 ntBASIC18.29■□□□□ 0.52
CLHC1Q8NHS4 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLHC1Q8NHS4 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CLHC1Q8NHS4 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CLHC1Q8NHS4 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CLHC1Q8NHS4 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.29■□□□□ 0.52
CLHC1Q8NHS4 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLHC1Q8NHS4 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.29■□□□□ 0.52
CLHC1Q8NHS4 AC008403.3-201ENST00000598924 454 ntBASIC18.29■□□□□ 0.52
CLHC1Q8NHS4 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLHC1Q8NHS4 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.29■□□□□ 0.52
CLHC1Q8NHS4 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLHC1Q8NHS4 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.29■□□□□ 0.52
CLHC1Q8NHS4 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLHC1Q8NHS4 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CLHC1Q8NHS4 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CLHC1Q8NHS4 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
CLHC1Q8NHS4 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.28■□□□□ 0.52
CLHC1Q8NHS4 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLHC1Q8NHS4 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CLHC1Q8NHS4 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CLHC1Q8NHS4 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CLHC1Q8NHS4 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
CLHC1Q8NHS4 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms