Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM3Q53GG5 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
PDLIM3Q53GG5 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM3Q53GG5 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
PDLIM3Q53GG5 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM3Q53GG5 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC15.82■□□□□ 0.12
PDLIM3Q53GG5 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC15.82■□□□□ 0.12
PDLIM3Q53GG5 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM3Q53GG5 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC15.82■□□□□ 0.12
PDLIM3Q53GG5 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC15.82■□□□□ 0.12
PDLIM3Q53GG5 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM3Q53GG5 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC15.81■□□□□ 0.12
PDLIM3Q53GG5 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM3Q53GG5 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM3Q53GG5 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM3Q53GG5 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM3Q53GG5 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM3Q53GG5 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM3Q53GG5 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM3Q53GG5 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
PDLIM3Q53GG5 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC15.81■□□□□ 0.12
PDLIM3Q53GG5 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC15.81■□□□□ 0.12
PDLIM3Q53GG5 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM3Q53GG5 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM3Q53GG5 REXO2-216ENST00000544196 452 ntTSL 3 BASIC15.81■□□□□ 0.12
PDLIM3Q53GG5 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC15.81■□□□□ 0.12
PDLIM3Q53GG5 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC15.81■□□□□ 0.12
PDLIM3Q53GG5 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM3Q53GG5 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
PDLIM3Q53GG5 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
PDLIM3Q53GG5 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM3Q53GG5 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM3Q53GG5 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 LINC01465-201ENST00000408887 1940 ntBASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 PHGDH-210ENST00000641115 1638 ntBASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 GCK-205ENST00000437084 1385 ntTSL 5 BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 CRAT-202ENST00000393384 973 ntTSL 2 BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 LSM12P1-201ENST00000411836 588 ntBASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 TSPY15P-201ENST00000457163 923 ntBASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 AC023632.3-201ENST00000521633 145 ntBASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
PDLIM3Q53GG5 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 HLA-B-256ENST00000639848 1089 ntBASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 AL049637.2-201ENST00000641778 930 ntBASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 AC092865.7-201ENST00000641832 219 ntBASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PDLIM3Q53GG5 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms