Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA4P78363 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC16.4■□□□□ 0.22
ABCA4P78363 MIR3652-201ENST00000579335 131 ntBASIC16.4■□□□□ 0.22
ABCA4P78363 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA4P78363 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA4P78363 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
ABCA4P78363 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA4P78363 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA4P78363 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA4P78363 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC16.4■□□□□ 0.22
ABCA4P78363 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA4P78363 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC16.4■□□□□ 0.22
ABCA4P78363 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA4P78363 AC020907.5-201ENST00000624372 1936 ntBASIC16.4■□□□□ 0.22
ABCA4P78363 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA4P78363 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA4P78363 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC16.4■□□□□ 0.22
ABCA4P78363 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA4P78363 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC16.4■□□□□ 0.22
ABCA4P78363 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC16.4■□□□□ 0.22
ABCA4P78363 GCSHP2-201ENST00000560971 527 ntBASIC16.4■□□□□ 0.22
ABCA4P78363 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA4P78363 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA4P78363 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
ABCA4P78363 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA4P78363 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA4P78363 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA4P78363 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC16.4■□□□□ 0.22
ABCA4P78363 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA4P78363 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA4P78363 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
ABCA4P78363 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
ABCA4P78363 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
ABCA4P78363 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA4P78363 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC16.39■□□□□ 0.21
ABCA4P78363 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA4P78363 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
ABCA4P78363 AC112907.2-201ENST00000448639 330 ntBASIC16.39■□□□□ 0.21
ABCA4P78363 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.39■□□□□ 0.21
ABCA4P78363 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
ABCA4P78363 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA4P78363 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC16.39■□□□□ 0.21
ABCA4P78363 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA4P78363 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA4P78363 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA4P78363 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC16.39■□□□□ 0.21
ABCA4P78363 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA4P78363 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA4P78363 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA4P78363 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA4P78363 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA4P78363 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA4P78363 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC16.39■□□□□ 0.21
ABCA4P78363 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA4P78363 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA4P78363 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA4P78363 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
ABCA4P78363 AC092597.1-201ENST00000487352 616 ntBASIC16.39■□□□□ 0.21
ABCA4P78363 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
ABCA4P78363 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.39■□□□□ 0.21
ABCA4P78363 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC16.39■□□□□ 0.21
ABCA4P78363 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC16.39■□□□□ 0.21
ABCA4P78363 CR769767.2-201ENST00000622735 460 ntBASIC16.39■□□□□ 0.21
ABCA4P78363 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC16.39■□□□□ 0.21
ABCA4P78363 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ABCA4P78363 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC16.39■□□□□ 0.21
ABCA4P78363 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC16.39■□□□□ 0.21
ABCA4P78363 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.39■□□□□ 0.21
ABCA4P78363 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC16.38■□□□□ 0.21
ABCA4P78363 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ABCA4P78363 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
ABCA4P78363 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC16.38■□□□□ 0.21
ABCA4P78363 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC16.38■□□□□ 0.21
ABCA4P78363 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC16.38■□□□□ 0.21
ABCA4P78363 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ABCA4P78363 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
ABCA4P78363 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ABCA4P78363 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.38■□□□□ 0.21
ABCA4P78363 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ABCA4P78363 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC16.38■□□□□ 0.21
ABCA4P78363 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ABCA4P78363 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ABCA4P78363 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
ABCA4P78363 USP39-204ENST00000409766 2033 ntTSL 2 BASIC16.38■□□□□ 0.21
ABCA4P78363 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ABCA4P78363 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ABCA4P78363 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ABCA4P78363 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ABCA4P78363 SPDYE13P-201ENST00000445314 798 ntBASIC16.38■□□□□ 0.21
ABCA4P78363 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.38■□□□□ 0.21
ABCA4P78363 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC16.38■□□□□ 0.21
ABCA4P78363 ZNF444P1-201ENST00000559497 298 ntBASIC16.38■□□□□ 0.21
ABCA4P78363 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.38■□□□□ 0.21
ABCA4P78363 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC16.38■□□□□ 0.21
ABCA4P78363 NPAP1P7-201ENST00000613027 823 ntBASIC16.38■□□□□ 0.21
ABCA4P78363 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ABCA4P78363 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ABCA4P78363 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ABCA4P78363 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC16.37■□□□□ 0.21
ABCA4P78363 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms