Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
RPL39P62891 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
RPL39P62891 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC13.5□□□□□ -0.25
RPL39P62891 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC13.5□□□□□ -0.25
RPL39P62891 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
RPL39P62891 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
RPL39P62891 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC13.5□□□□□ -0.25
RPL39P62891 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
RPL39P62891 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
RPL39P62891 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
RPL39P62891 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
RPL39P62891 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC13.5□□□□□ -0.25
RPL39P62891 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
RPL39P62891 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
RPL39P62891 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
RPL39P62891 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC13.49□□□□□ -0.25
RPL39P62891 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RPL39P62891 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC13.49□□□□□ -0.25
RPL39P62891 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
RPL39P62891 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
RPL39P62891 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC13.49□□□□□ -0.25
RPL39P62891 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RPL39P62891 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
RPL39P62891 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RPL39P62891 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC13.49□□□□□ -0.25
RPL39P62891 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC13.49□□□□□ -0.25
RPL39P62891 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
RPL39P62891 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RPL39P62891 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
RPL39P62891 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC13.49□□□□□ -0.25
RPL39P62891 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RPL39P62891 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC13.49□□□□□ -0.25
RPL39P62891 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
RPL39P62891 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC13.49□□□□□ -0.25
RPL39P62891 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC13.49□□□□□ -0.25
RPL39P62891 C2orf69P4-201ENST00000565394 541 ntBASIC13.49□□□□□ -0.25
RPL39P62891 CYP2T3P-201ENST00000601990 817 ntBASIC13.49□□□□□ -0.25
RPL39P62891 AC005837.3-201ENST00000612163 286 ntBASIC13.49□□□□□ -0.25
RPL39P62891 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
RPL39P62891 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
RPL39P62891 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
RPL39P62891 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC13.49□□□□□ -0.25
RPL39P62891 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RPL39P62891 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RPL39P62891 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RPL39P62891 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RPL39P62891 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
RPL39P62891 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RPL39P62891 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RPL39P62891 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RPL39P62891 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
RPL39P62891 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RPL39P62891 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC13.49□□□□□ -0.25
RPL39P62891 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
RPL39P62891 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
RPL39P62891 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RPL39P62891 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
RPL39P62891 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RPL39P62891 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RPL39P62891 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RPL39P62891 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RPL39P62891 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
RPL39P62891 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
RPL39P62891 MADD-208ENST00000405573 1823 ntTSL 5 BASIC13.48□□□□□ -0.25
RPL39P62891 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RPL39P62891 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
RPL39P62891 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
RPL39P62891 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC13.48□□□□□ -0.25
RPL39P62891 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RPL39P62891 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RPL39P62891 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
RPL39P62891 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC13.48□□□□□ -0.25
RPL39P62891 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
RPL39P62891 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RPL39P62891 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RPL39P62891 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
RPL39P62891 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC13.48□□□□□ -0.25
RPL39P62891 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RPL39P62891 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC13.48□□□□□ -0.25
RPL39P62891 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC13.48□□□□□ -0.25
RPL39P62891 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
RPL39P62891 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
RPL39P62891 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
RPL39P62891 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC13.48□□□□□ -0.25
RPL39P62891 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC13.48□□□□□ -0.25
RPL39P62891 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
RPL39P62891 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
RPL39P62891 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
RPL39P62891 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
RPL39P62891 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC13.48□□□□□ -0.25
RPL39P62891 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC13.48□□□□□ -0.25
RPL39P62891 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
RPL39P62891 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC13.47□□□□□ -0.25
RPL39P62891 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RPL39P62891 ANO7L1-203ENST00000602586 1720 ntBASIC13.47□□□□□ -0.25
RPL39P62891 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RPL39P62891 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC13.47□□□□□ -0.25
RPL39P62891 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
RPL39P62891 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
RPL39P62891 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms