Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
CKS1BP61024 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC13.33□□□□□ -0.27
CKS1BP61024 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC13.33□□□□□ -0.27
CKS1BP61024 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC13.33□□□□□ -0.28
CKS1BP61024 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CKS1BP61024 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
CKS1BP61024 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
CKS1BP61024 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
CKS1BP61024 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC13.33□□□□□ -0.28
CKS1BP61024 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
CKS1BP61024 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CKS1BP61024 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CKS1BP61024 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC13.33□□□□□ -0.28
CKS1BP61024 AC027612.3-201ENST00000413684 1047 ntBASIC13.33□□□□□ -0.28
CKS1BP61024 AC091799.1-201ENST00000422823 811 ntBASIC13.33□□□□□ -0.28
CKS1BP61024 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC13.33□□□□□ -0.28
CKS1BP61024 SUDS3P1-201ENST00000505831 966 ntBASIC13.33□□□□□ -0.28
CKS1BP61024 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CKS1BP61024 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC13.33□□□□□ -0.28
CKS1BP61024 FGF8-207ENST00000618991 856 ntTSL 3 BASIC13.33□□□□□ -0.28
CKS1BP61024 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC13.33□□□□□ -0.28
CKS1BP61024 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC13.33□□□□□ -0.28
CKS1BP61024 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CKS1BP61024 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
CKS1BP61024 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
CKS1BP61024 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CKS1BP61024 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CKS1BP61024 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
CKS1BP61024 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC13.33□□□□□ -0.28
CKS1BP61024 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CKS1BP61024 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC13.33□□□□□ -0.28
CKS1BP61024 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CKS1BP61024 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CKS1BP61024 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC13.33□□□□□ -0.28
CKS1BP61024 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CKS1BP61024 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
CKS1BP61024 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CKS1BP61024 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CKS1BP61024 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CKS1BP61024 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CKS1BP61024 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CKS1BP61024 F11R-206ENST00000621309 4770 ntTSL 5 BASIC13.32□□□□□ -0.28
CKS1BP61024 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
CKS1BP61024 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CKS1BP61024 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CKS1BP61024 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
CKS1BP61024 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC13.32□□□□□ -0.28
CKS1BP61024 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CKS1BP61024 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CKS1BP61024 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CKS1BP61024 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CKS1BP61024 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC13.32□□□□□ -0.28
CKS1BP61024 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CKS1BP61024 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CKS1BP61024 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CKS1BP61024 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CKS1BP61024 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC13.32□□□□□ -0.28
CKS1BP61024 AK1-201ENST00000223836 736 ntTSL 3 BASIC13.32□□□□□ -0.28
CKS1BP61024 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CKS1BP61024 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CKS1BP61024 COX20-201ENST00000366528 568 ntTSL 2 BASIC13.32□□□□□ -0.28
CKS1BP61024 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CKS1BP61024 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CKS1BP61024 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC13.32□□□□□ -0.28
CKS1BP61024 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
CKS1BP61024 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC13.32□□□□□ -0.28
CKS1BP61024 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC13.32□□□□□ -0.28
CKS1BP61024 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC13.32□□□□□ -0.28
CKS1BP61024 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC13.32□□□□□ -0.28
CKS1BP61024 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC13.32□□□□□ -0.28
CKS1BP61024 AL031432.3-201ENST00000607698 485 ntBASIC13.32□□□□□ -0.28
CKS1BP61024 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CKS1BP61024 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC13.32□□□□□ -0.28
CKS1BP61024 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CKS1BP61024 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC13.32□□□□□ -0.28
CKS1BP61024 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC13.32□□□□□ -0.28
CKS1BP61024 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
CKS1BP61024 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CKS1BP61024 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC13.32□□□□□ -0.28
CKS1BP61024 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC13.32□□□□□ -0.28
CKS1BP61024 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CKS1BP61024 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC13.32□□□□□ -0.28
CKS1BP61024 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC13.32□□□□□ -0.28
CKS1BP61024 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC13.32□□□□□ -0.28
CKS1BP61024 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC13.31□□□□□ -0.28
CKS1BP61024 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CKS1BP61024 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CKS1BP61024 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CKS1BP61024 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC13.31□□□□□ -0.28
CKS1BP61024 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
CKS1BP61024 RBM17P2-201ENST00000616397 1405 ntBASIC13.31□□□□□ -0.28
CKS1BP61024 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CKS1BP61024 OVCH1-AS1-204ENST00000641955 5529 ntBASIC13.31□□□□□ -0.28
CKS1BP61024 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CKS1BP61024 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CKS1BP61024 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CKS1BP61024 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC13.31□□□□□ -0.28
CKS1BP61024 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
CKS1BP61024 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CKS1BP61024 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms