Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
FOXA3P55318 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA3P55318 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA3P55318 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA3P55318 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
FOXA3P55318 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA3P55318 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
FOXA3P55318 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA3P55318 AC099398.1-201ENST00000567919 2776 ntBASIC14.33□□□□□ -0.12
FOXA3P55318 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA3P55318 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC14.32□□□□□ -0.12
FOXA3P55318 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA3P55318 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA3P55318 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC14.32□□□□□ -0.12
FOXA3P55318 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA3P55318 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
FOXA3P55318 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC14.32□□□□□ -0.12
FOXA3P55318 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA3P55318 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC14.32□□□□□ -0.12
FOXA3P55318 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA3P55318 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA3P55318 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA3P55318 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
FOXA3P55318 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA3P55318 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA3P55318 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA3P55318 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
FOXA3P55318 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC14.32□□□□□ -0.12
FOXA3P55318 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC14.32□□□□□ -0.12
FOXA3P55318 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA3P55318 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
FOXA3P55318 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA3P55318 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
FOXA3P55318 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
FOXA3P55318 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
FOXA3P55318 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA3P55318 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC14.32□□□□□ -0.12
FOXA3P55318 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA3P55318 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA3P55318 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA3P55318 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA3P55318 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
FOXA3P55318 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA3P55318 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
FOXA3P55318 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
FOXA3P55318 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA3P55318 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
FOXA3P55318 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA3P55318 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA3P55318 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA3P55318 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC14.31□□□□□ -0.12
FOXA3P55318 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA3P55318 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA3P55318 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA3P55318 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
FOXA3P55318 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA3P55318 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA3P55318 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA3P55318 AF213884.3-201ENST00000563833 479 ntBASIC14.31□□□□□ -0.12
FOXA3P55318 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC14.31□□□□□ -0.12
FOXA3P55318 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC14.31□□□□□ -0.12
FOXA3P55318 ZNF815P-204ENST00000434898 1737 ntBASIC14.31□□□□□ -0.12
FOXA3P55318 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC14.31□□□□□ -0.12
FOXA3P55318 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA3P55318 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
FOXA3P55318 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
FOXA3P55318 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA3P55318 IRX1P1-201ENST00000438849 1838 ntBASIC14.31□□□□□ -0.12
FOXA3P55318 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA3P55318 PXK-206ENST00000463280 2825 ntTSL 2 BASIC14.31□□□□□ -0.12
FOXA3P55318 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC14.31□□□□□ -0.12
FOXA3P55318 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA3P55318 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA3P55318 EML3-212ENST00000494176 2901 ntTSL 2 BASIC14.31□□□□□ -0.12
FOXA3P55318 EML3-216ENST00000529309 2909 ntTSL 2 BASIC14.31□□□□□ -0.12
FOXA3P55318 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
FOXA3P55318 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
FOXA3P55318 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
FOXA3P55318 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC14.3□□□□□ -0.12
FOXA3P55318 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA3P55318 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA3P55318 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA3P55318 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
FOXA3P55318 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
FOXA3P55318 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC14.3□□□□□ -0.12
FOXA3P55318 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
FOXA3P55318 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC14.3□□□□□ -0.12
FOXA3P55318 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC14.3□□□□□ -0.12
FOXA3P55318 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC14.3□□□□□ -0.12
FOXA3P55318 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA3P55318 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC14.3□□□□□ -0.12
FOXA3P55318 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC14.3□□□□□ -0.12
FOXA3P55318 AC096631.2-201ENST00000436136 790 ntBASIC14.3□□□□□ -0.12
FOXA3P55318 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA3P55318 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA3P55318 AC091305.1-201ENST00000479476 895 ntBASIC14.3□□□□□ -0.12
FOXA3P55318 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC14.3□□□□□ -0.12
FOXA3P55318 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC14.3□□□□□ -0.12
FOXA3P55318 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
FOXA3P55318 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms