Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.49■□□□□ 0.55
FOXA1P55317 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.49■□□□□ 0.55
FOXA1P55317 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
FOXA1P55317 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
FOXA1P55317 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.48■□□□□ 0.55
FOXA1P55317 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
FOXA1P55317 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.48■□□□□ 0.55
FOXA1P55317 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
FOXA1P55317 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
FOXA1P55317 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
FOXA1P55317 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
FOXA1P55317 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
FOXA1P55317 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
FOXA1P55317 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.48■□□□□ 0.55
FOXA1P55317 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
FOXA1P55317 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
FOXA1P55317 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
FOXA1P55317 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
FOXA1P55317 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
FOXA1P55317 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
FOXA1P55317 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.48■□□□□ 0.55
FOXA1P55317 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.48■□□□□ 0.55
FOXA1P55317 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.48■□□□□ 0.55
FOXA1P55317 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.48■□□□□ 0.55
FOXA1P55317 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
FOXA1P55317 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA1P55317 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA1P55317 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA1P55317 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA1P55317 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.47■□□□□ 0.55
FOXA1P55317 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
FOXA1P55317 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA1P55317 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA1P55317 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.47■□□□□ 0.55
FOXA1P55317 NBPF21P-201ENST00000425093 1451 ntBASIC18.47■□□□□ 0.55
FOXA1P55317 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA1P55317 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA1P55317 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
FOXA1P55317 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA1P55317 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA1P55317 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.47■□□□□ 0.55
FOXA1P55317 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA1P55317 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.47■□□□□ 0.55
FOXA1P55317 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA1P55317 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA1P55317 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA1P55317 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA1P55317 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
FOXA1P55317 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
FOXA1P55317 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA1P55317 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA1P55317 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.47■□□□□ 0.55
FOXA1P55317 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA1P55317 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.47■□□□□ 0.55
FOXA1P55317 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA1P55317 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA1P55317 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA1P55317 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA1P55317 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA1P55317 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA1P55317 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA1P55317 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
FOXA1P55317 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
FOXA1P55317 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
FOXA1P55317 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
FOXA1P55317 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
FOXA1P55317 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
FOXA1P55317 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
FOXA1P55317 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.46■□□□□ 0.55
FOXA1P55317 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
FOXA1P55317 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
FOXA1P55317 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
FOXA1P55317 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
FOXA1P55317 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
FOXA1P55317 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
FOXA1P55317 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
FOXA1P55317 HLA-L-209ENST00000420110 1011 ntBASIC18.46■□□□□ 0.55
FOXA1P55317 TSPY23P-201ENST00000440136 739 ntBASIC18.46■□□□□ 0.55
FOXA1P55317 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.46■□□□□ 0.55
FOXA1P55317 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC18.46■□□□□ 0.55
FOXA1P55317 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.46■□□□□ 0.55
FOXA1P55317 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.46■□□□□ 0.55
FOXA1P55317 PRKY-204ENST00000533551 1019 ntBASIC18.46■□□□□ 0.55
FOXA1P55317 C1QL1P1-201ENST00000568105 661 ntBASIC18.46■□□□□ 0.55
FOXA1P55317 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.46■□□□□ 0.55
FOXA1P55317 AC233263.1-201ENST00000578059 224 ntBASIC18.46■□□□□ 0.55
FOXA1P55317 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.46■□□□□ 0.55
FOXA1P55317 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
FOXA1P55317 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
FOXA1P55317 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.46■□□□□ 0.55
FOXA1P55317 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.46■□□□□ 0.55
FOXA1P55317 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.46■□□□□ 0.55
FOXA1P55317 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
FOXA1P55317 AC135050.7-201ENST00000624508 2218 ntBASIC18.46■□□□□ 0.55
FOXA1P55317 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.46■□□□□ 0.55
FOXA1P55317 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
FOXA1P55317 ANO7L1-203ENST00000602586 1720 ntBASIC18.46■□□□□ 0.55
FOXA1P55317 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
FOXA1P55317 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
FOXA1P55317 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.46■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms