Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 MCCD1P1-208ENST00000445732 328 ntBASIC19.01■□□□□ 0.63
CXCL12P48061 FOSL1P1-201ENST00000511041 816 ntBASIC19.01■□□□□ 0.63
CXCL12P48061 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CXCL12P48061 AC012615.1-201ENST00000565797 1299 ntBASIC19.01■□□□□ 0.63
CXCL12P48061 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC19.01■□□□□ 0.63
CXCL12P48061 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CXCL12P48061 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC19.01■□□□□ 0.63
CXCL12P48061 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CXCL12P48061 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.01■□□□□ 0.63
CXCL12P48061 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CXCL12P48061 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CXCL12P48061 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.01■□□□□ 0.63
CXCL12P48061 AP005212.1-201ENST00000581547 1997 ntBASIC19.01■□□□□ 0.63
CXCL12P48061 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19■□□□□ 0.63
CXCL12P48061 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CXCL12P48061 AL391807.1-203ENST00000604392 2365 ntBASIC19■□□□□ 0.63
CXCL12P48061 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC19■□□□□ 0.63
CXCL12P48061 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CXCL12P48061 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CXCL12P48061 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CXCL12P48061 AC079781.3-201ENST00000449110 356 ntBASIC19■□□□□ 0.63
CXCL12P48061 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19■□□□□ 0.63
CXCL12P48061 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC19■□□□□ 0.63
CXCL12P48061 KRT18P31-201ENST00000506277 1292 ntBASIC19■□□□□ 0.63
CXCL12P48061 CIB2-208ENST00000560618 804 ntTSL 2 BASIC19■□□□□ 0.63
CXCL12P48061 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19■□□□□ 0.63
CXCL12P48061 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19■□□□□ 0.63
CXCL12P48061 AC112497.1-201ENST00000624824 639 ntBASIC19■□□□□ 0.63
CXCL12P48061 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19■□□□□ 0.63
CXCL12P48061 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CXCL12P48061 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19■□□□□ 0.63
CXCL12P48061 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19■□□□□ 0.63
CXCL12P48061 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CXCL12P48061 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CXCL12P48061 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC18.99■□□□□ 0.63
CXCL12P48061 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
CXCL12P48061 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CXCL12P48061 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CXCL12P48061 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
CXCL12P48061 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.99■□□□□ 0.63
CXCL12P48061 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CXCL12P48061 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CXCL12P48061 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CXCL12P48061 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CXCL12P48061 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
CXCL12P48061 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CXCL12P48061 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CXCL12P48061 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
CXCL12P48061 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CXCL12P48061 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CXCL12P48061 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.99■□□□□ 0.63
CXCL12P48061 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.99■□□□□ 0.63
CXCL12P48061 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CXCL12P48061 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC18.99■□□□□ 0.63
CXCL12P48061 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.99■□□□□ 0.63
CXCL12P48061 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
CXCL12P48061 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CXCL12P48061 MIR3917-201ENST00000580971 93 ntBASIC18.99■□□□□ 0.63
CXCL12P48061 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC18.99■□□□□ 0.63
CXCL12P48061 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CXCL12P48061 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CXCL12P48061 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CXCL12P48061 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
CXCL12P48061 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC18.98■□□□□ 0.63
CXCL12P48061 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CXCL12P48061 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.98■□□□□ 0.63
CXCL12P48061 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
CXCL12P48061 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.98■□□□□ 0.63
CXCL12P48061 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CXCL12P48061 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.98■□□□□ 0.63
CXCL12P48061 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CXCL12P48061 AC133561.1-201ENST00000568600 2415 ntBASIC18.98■□□□□ 0.63
CXCL12P48061 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
CXCL12P48061 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.98■□□□□ 0.63
CXCL12P48061 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.98■□□□□ 0.63
CXCL12P48061 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.98■□□□□ 0.63
CXCL12P48061 TOB2P1-201ENST00000469761 992 ntBASIC18.98■□□□□ 0.63
CXCL12P48061 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.98■□□□□ 0.63
CXCL12P48061 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.98■□□□□ 0.63
CXCL12P48061 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.98■□□□□ 0.63
CXCL12P48061 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CXCL12P48061 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.98■□□□□ 0.63
CXCL12P48061 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CXCL12P48061 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CXCL12P48061 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CXCL12P48061 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CXCL12P48061 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CXCL12P48061 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CXCL12P48061 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.97■□□□□ 0.63
CXCL12P48061 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CXCL12P48061 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CXCL12P48061 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
CXCL12P48061 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
CXCL12P48061 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CXCL12P48061 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CXCL12P48061 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
CXCL12P48061 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.97■□□□□ 0.63
CXCL12P48061 AC079776.4-201ENST00000511039 504 ntBASIC18.97■□□□□ 0.63
CXCL12P48061 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
CXCL12P48061 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms