Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 KRT8P3-201ENST00000519669 1449 ntBASIC32■■■□□ 2.71
CUX1P39880 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC32■■■□□ 2.71
CUX1P39880 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC32■■■□□ 2.71
CUX1P39880 LINC00265-3P-201ENST00000447588 903 ntBASIC32■■■□□ 2.71
CUX1P39880 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC32■■■□□ 2.71
CUX1P39880 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC32■■■□□ 2.71
CUX1P39880 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC32■■■□□ 2.71
CUX1P39880 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC32■■■□□ 2.71
CUX1P39880 UBC-206ENST00000538617 1303 ntTSL 5 BASIC32■■■□□ 2.71
CUX1P39880 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC31.99■■■□□ 2.71
CUX1P39880 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC31.99■■■□□ 2.71
CUX1P39880 AC099778.1-201ENST00000568593 1911 ntBASIC31.99■■■□□ 2.71
CUX1P39880 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC31.99■■■□□ 2.71
CUX1P39880 PNN-202ENST00000553331 656 ntTSL 3 BASIC31.99■■■□□ 2.71
CUX1P39880 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC31.98■■■□□ 2.71
CUX1P39880 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
CUX1P39880 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
CUX1P39880 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
CUX1P39880 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC31.98■■■□□ 2.71
CUX1P39880 TCF3P1-201ENST00000423021 1937 ntBASIC31.98■■■□□ 2.71
CUX1P39880 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC31.98■■■□□ 2.71
CUX1P39880 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
CUX1P39880 AL160237.2-201ENST00000556165 472 ntBASIC31.98■■■□□ 2.71
CUX1P39880 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC31.98■■■□□ 2.71
CUX1P39880 IL11-204ENST00000590625 1028 ntTSL 2 BASIC31.98■■■□□ 2.71
CUX1P39880 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC31.98■■■□□ 2.71
CUX1P39880 LITAF-220ENST00000620789 692 ntTSL 5 BASIC31.98■■■□□ 2.71
CUX1P39880 GABARAPL3-202ENST00000624044 1851 ntBASIC31.98■■■□□ 2.71
CUX1P39880 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC31.97■■■□□ 2.71
CUX1P39880 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC31.97■■■□□ 2.71
CUX1P39880 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
CUX1P39880 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC31.97■■■□□ 2.71
CUX1P39880 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC31.97■■■□□ 2.71
CUX1P39880 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC31.97■■■□□ 2.71
CUX1P39880 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC31.97■■■□□ 2.71
CUX1P39880 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC31.97■■■□□ 2.71
CUX1P39880 AC112497.1-201ENST00000624824 639 ntBASIC31.97■■■□□ 2.71
CUX1P39880 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC31.97■■■□□ 2.71
CUX1P39880 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC31.97■■■□□ 2.71
CUX1P39880 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC31.97■■■□□ 2.71
CUX1P39880 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
CUX1P39880 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC31.97■■■□□ 2.71
CUX1P39880 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
CUX1P39880 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC31.96■■■□□ 2.71
CUX1P39880 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
CUX1P39880 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
CUX1P39880 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
CUX1P39880 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
CUX1P39880 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC31.96■■■□□ 2.71
CUX1P39880 NAA38-203ENST00000575071 553 ntTSL 2 BASIC31.96■■■□□ 2.71
CUX1P39880 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC31.96■■■□□ 2.71
CUX1P39880 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
CUX1P39880 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC31.96■■■□□ 2.71
CUX1P39880 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
CUX1P39880 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
CUX1P39880 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC31.96■■■□□ 2.71
CUX1P39880 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC31.96■■■□□ 2.71
CUX1P39880 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC31.95■■■□□ 2.71
CUX1P39880 AKR1C7P-201ENST00000305623 895 ntBASIC31.95■■■□□ 2.71
CUX1P39880 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
CUX1P39880 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
CUX1P39880 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC31.95■■■□□ 2.71
CUX1P39880 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC31.95■■■□□ 2.71
CUX1P39880 KRT18P31-201ENST00000506277 1292 ntBASIC31.95■■■□□ 2.71
CUX1P39880 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
CUX1P39880 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC31.95■■■□□ 2.71
CUX1P39880 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC31.95■■■□□ 2.71
CUX1P39880 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC31.95■■■□□ 2.7
CUX1P39880 MRPL3P1-201ENST00000400109 1033 ntBASIC31.95■■■□□ 2.7
CUX1P39880 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC31.95■■■□□ 2.7
CUX1P39880 AL390719.2-201ENST00000606993 987 ntBASIC31.95■■■□□ 2.7
CUX1P39880 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC31.95■■■□□ 2.7
CUX1P39880 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC31.95■■■□□ 2.7
CUX1P39880 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
CUX1P39880 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC31.94■■■□□ 2.7
CUX1P39880 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
CUX1P39880 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC31.94■■■□□ 2.7
CUX1P39880 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
CUX1P39880 FOSL1P1-201ENST00000511041 816 ntBASIC31.94■■■□□ 2.7
CUX1P39880 AP000867.3-201ENST00000524675 377 ntBASIC31.94■■■□□ 2.7
CUX1P39880 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC31.94■■■□□ 2.7
CUX1P39880 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC31.94■■■□□ 2.7
CUX1P39880 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC31.94■■■□□ 2.7
CUX1P39880 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC31.94■■■□□ 2.7
CUX1P39880 PALM-208ENST00000592155 2272 ntTSL 4 BASIC31.94■■■□□ 2.7
CUX1P39880 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC31.94■■■□□ 2.7
CUX1P39880 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
CUX1P39880 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
CUX1P39880 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
CUX1P39880 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
CUX1P39880 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
CUX1P39880 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
CUX1P39880 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC31.93■■■□□ 2.7
CUX1P39880 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC31.93■■■□□ 2.7
CUX1P39880 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC31.93■■■□□ 2.7
CUX1P39880 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
CUX1P39880 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
CUX1P39880 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
CUX1P39880 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC31.93■■■□□ 2.7
CUX1P39880 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC31.93■■■□□ 2.7
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms