Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.13■□□□□ 0.49
RORAP35398 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.13■□□□□ 0.49
RORAP35398 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RORAP35398 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RORAP35398 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RORAP35398 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.13■□□□□ 0.49
RORAP35398 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
RORAP35398 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.13■□□□□ 0.49
RORAP35398 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
RORAP35398 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RORAP35398 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RORAP35398 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.12■□□□□ 0.49
RORAP35398 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.12■□□□□ 0.49
RORAP35398 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RORAP35398 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RORAP35398 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.12■□□□□ 0.49
RORAP35398 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RORAP35398 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
RORAP35398 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RORAP35398 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RORAP35398 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.12■□□□□ 0.49
RORAP35398 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RORAP35398 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
RORAP35398 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
RORAP35398 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
RORAP35398 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RORAP35398 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
RORAP35398 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.12■□□□□ 0.49
RORAP35398 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.12■□□□□ 0.49
RORAP35398 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
RORAP35398 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.12■□□□□ 0.49
RORAP35398 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.12■□□□□ 0.49
RORAP35398 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.12■□□□□ 0.49
RORAP35398 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RORAP35398 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
RORAP35398 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
RORAP35398 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.12■□□□□ 0.49
RORAP35398 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.12■□□□□ 0.49
RORAP35398 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
RORAP35398 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.12■□□□□ 0.49
RORAP35398 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.12■□□□□ 0.49
RORAP35398 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
RORAP35398 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.12■□□□□ 0.49
RORAP35398 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
RORAP35398 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
RORAP35398 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RORAP35398 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.11■□□□□ 0.49
RORAP35398 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.11■□□□□ 0.49
RORAP35398 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.11■□□□□ 0.49
RORAP35398 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
RORAP35398 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
RORAP35398 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
RORAP35398 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RORAP35398 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RORAP35398 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
RORAP35398 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RORAP35398 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RORAP35398 ZNF815P-204ENST00000434898 1737 ntBASIC18.11■□□□□ 0.49
RORAP35398 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RORAP35398 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RORAP35398 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.11■□□□□ 0.49
RORAP35398 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
RORAP35398 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RORAP35398 AFG3L1P-217ENST00000557444 2447 ntBASIC18.11■□□□□ 0.49
RORAP35398 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RORAP35398 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.11■□□□□ 0.49
RORAP35398 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RORAP35398 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RORAP35398 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
RORAP35398 AC125437.2-201ENST00000625180 2167 ntBASIC18.1■□□□□ 0.49
RORAP35398 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RORAP35398 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.1■□□□□ 0.49
RORAP35398 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
RORAP35398 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RORAP35398 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.1■□□□□ 0.49
RORAP35398 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RORAP35398 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RORAP35398 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.1■□□□□ 0.49
RORAP35398 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.1■□□□□ 0.49
RORAP35398 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.1■□□□□ 0.49
RORAP35398 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.1■□□□□ 0.49
RORAP35398 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RORAP35398 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.1■□□□□ 0.49
RORAP35398 AC117947.1-201ENST00000427448 529 ntBASIC18.1■□□□□ 0.49
RORAP35398 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RORAP35398 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.1■□□□□ 0.49
RORAP35398 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.1■□□□□ 0.49
RORAP35398 WWOX-216ENST00000569818 525 ntBASIC18.1■□□□□ 0.49
RORAP35398 NTF6B-201ENST00000591913 560 ntBASIC18.1■□□□□ 0.49
RORAP35398 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.1■□□□□ 0.49
RORAP35398 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RORAP35398 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
RORAP35398 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.09■□□□□ 0.49
RORAP35398 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
RORAP35398 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.09■□□□□ 0.49
RORAP35398 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RORAP35398 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RORAP35398 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
RORAP35398 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RORAP35398 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms