Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.69■□□□□ 0.58
SHMT2P34897 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.69■□□□□ 0.58
SHMT2P34897 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.69■□□□□ 0.58
SHMT2P34897 DGCR10-201ENST00000609839 495 ntBASIC18.69■□□□□ 0.58
SHMT2P34897 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SHMT2P34897 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.69■□□□□ 0.58
SHMT2P34897 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SHMT2P34897 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHMT2P34897 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SHMT2P34897 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
SHMT2P34897 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHMT2P34897 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHMT2P34897 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
SHMT2P34897 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHMT2P34897 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
SHMT2P34897 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
SHMT2P34897 AC093503.3-201ENST00000624917 2352 ntBASIC18.68■□□□□ 0.58
SHMT2P34897 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.68■□□□□ 0.58
SHMT2P34897 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHMT2P34897 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.68■□□□□ 0.58
SHMT2P34897 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SHMT2P34897 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHMT2P34897 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
SHMT2P34897 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHMT2P34897 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHMT2P34897 UNC93B2-201ENST00000285383 730 ntBASIC18.68■□□□□ 0.58
SHMT2P34897 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.68■□□□□ 0.58
SHMT2P34897 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SHMT2P34897 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC18.68■□□□□ 0.58
SHMT2P34897 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.68■□□□□ 0.58
SHMT2P34897 AC011298.2-201ENST00000617989 482 ntBASIC18.68■□□□□ 0.58
SHMT2P34897 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHMT2P34897 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHMT2P34897 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SHMT2P34897 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHMT2P34897 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SHMT2P34897 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHMT2P34897 AC093484.2-201ENST00000580996 2166 ntBASIC18.68■□□□□ 0.58
SHMT2P34897 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHMT2P34897 AC104417.2-201ENST00000562989 1793 ntBASIC18.68■□□□□ 0.58
SHMT2P34897 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHMT2P34897 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.68■□□□□ 0.58
SHMT2P34897 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHMT2P34897 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.68■□□□□ 0.58
SHMT2P34897 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHMT2P34897 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.67■□□□□ 0.58
SHMT2P34897 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SHMT2P34897 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHMT2P34897 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SHMT2P34897 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHMT2P34897 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHMT2P34897 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.67■□□□□ 0.58
SHMT2P34897 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHMT2P34897 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHMT2P34897 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHMT2P34897 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SHMT2P34897 MESTP1-201ENST00000404287 994 ntBASIC18.67■□□□□ 0.58
SHMT2P34897 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
SHMT2P34897 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.67■□□□□ 0.58
SHMT2P34897 AC011506.1-201ENST00000474329 610 ntBASIC18.67■□□□□ 0.58
SHMT2P34897 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18.67■□□□□ 0.58
SHMT2P34897 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SHMT2P34897 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC18.67■□□□□ 0.58
SHMT2P34897 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SHMT2P34897 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHMT2P34897 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SHMT2P34897 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.67■□□□□ 0.58
SHMT2P34897 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHMT2P34897 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHMT2P34897 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SHMT2P34897 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.67■□□□□ 0.58
SHMT2P34897 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHMT2P34897 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
SHMT2P34897 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
SHMT2P34897 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHMT2P34897 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.66■□□□□ 0.58
SHMT2P34897 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SHMT2P34897 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.66■□□□□ 0.58
SHMT2P34897 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.66■□□□□ 0.58
SHMT2P34897 RBM17P1-201ENST00000453646 1190 ntBASIC18.66■□□□□ 0.58
SHMT2P34897 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.66■□□□□ 0.58
SHMT2P34897 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC18.66■□□□□ 0.58
SHMT2P34897 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.66■□□□□ 0.58
SHMT2P34897 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC18.66■□□□□ 0.58
SHMT2P34897 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHMT2P34897 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHMT2P34897 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHMT2P34897 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
SHMT2P34897 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SHMT2P34897 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.66■□□□□ 0.58
SHMT2P34897 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.65■□□□□ 0.58
SHMT2P34897 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHMT2P34897 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHMT2P34897 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHMT2P34897 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHMT2P34897 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHMT2P34897 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.65■□□□□ 0.58
SHMT2P34897 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.65■□□□□ 0.58
SHMT2P34897 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.65■□□□□ 0.58
SHMT2P34897 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms