Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
BDNFP23560 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
BDNFP23560 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.12■□□□□ 0.81
BDNFP23560 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
BDNFP23560 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
BDNFP23560 TEX21P-204ENST00000641479 1693 ntBASIC20.12■□□□□ 0.81
BDNFP23560 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
BDNFP23560 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.12■□□□□ 0.81
BDNFP23560 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC20.11■□□□□ 0.81
BDNFP23560 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.11■□□□□ 0.81
BDNFP23560 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
BDNFP23560 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
BDNFP23560 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
BDNFP23560 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
BDNFP23560 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.11■□□□□ 0.81
BDNFP23560 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
BDNFP23560 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.11■□□□□ 0.81
BDNFP23560 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC20.11■□□□□ 0.81
BDNFP23560 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.11■□□□□ 0.81
BDNFP23560 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.11■□□□□ 0.81
BDNFP23560 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC20.11■□□□□ 0.81
BDNFP23560 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC20.11■□□□□ 0.81
BDNFP23560 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
BDNFP23560 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.11■□□□□ 0.81
BDNFP23560 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
BDNFP23560 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.11■□□□□ 0.81
BDNFP23560 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
BDNFP23560 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
BDNFP23560 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC20.11■□□□□ 0.81
BDNFP23560 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC20.1■□□□□ 0.81
BDNFP23560 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.1■□□□□ 0.81
BDNFP23560 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
BDNFP23560 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
BDNFP23560 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC20.1■□□□□ 0.81
BDNFP23560 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
BDNFP23560 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.1■□□□□ 0.81
BDNFP23560 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
BDNFP23560 TBC1D3P2-202ENST00000577902 1649 ntBASIC20.1■□□□□ 0.81
BDNFP23560 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
BDNFP23560 AC093484.2-201ENST00000580996 2166 ntBASIC20.1■□□□□ 0.81
BDNFP23560 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC20.1■□□□□ 0.81
BDNFP23560 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.1■□□□□ 0.81
BDNFP23560 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.1■□□□□ 0.81
BDNFP23560 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.1■□□□□ 0.81
BDNFP23560 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC20.1■□□□□ 0.81
BDNFP23560 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
BDNFP23560 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.1■□□□□ 0.81
BDNFP23560 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.1■□□□□ 0.81
BDNFP23560 AC010331.1-201ENST00000611423 582 ntBASIC20.1■□□□□ 0.81
BDNFP23560 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC20.1■□□□□ 0.81
BDNFP23560 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
BDNFP23560 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
BDNFP23560 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
BDNFP23560 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC20.1■□□□□ 0.81
BDNFP23560 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
BDNFP23560 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
BDNFP23560 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
BDNFP23560 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
BDNFP23560 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
BDNFP23560 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
BDNFP23560 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
BDNFP23560 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
BDNFP23560 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
BDNFP23560 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
BDNFP23560 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.09■□□□□ 0.81
BDNFP23560 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
BDNFP23560 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
BDNFP23560 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
BDNFP23560 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
BDNFP23560 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.09■□□□□ 0.81
BDNFP23560 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
BDNFP23560 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC20.09■□□□□ 0.81
BDNFP23560 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.09■□□□□ 0.81
BDNFP23560 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
BDNFP23560 LGALS8-AS1-201ENST00000487567 1457 ntBASIC20.09■□□□□ 0.81
BDNFP23560 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
BDNFP23560 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
BDNFP23560 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
BDNFP23560 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
BDNFP23560 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
BDNFP23560 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
BDNFP23560 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.08■□□□□ 0.81
BDNFP23560 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
BDNFP23560 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC20.08■□□□□ 0.81
BDNFP23560 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
BDNFP23560 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.08■□□□□ 0.81
BDNFP23560 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.08■□□□□ 0.81
BDNFP23560 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
BDNFP23560 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
BDNFP23560 BUB3-202ENST00000368859 667 ntTSL 3 BASIC20.08■□□□□ 0.81
BDNFP23560 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC20.08■□□□□ 0.81
BDNFP23560 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC20.08■□□□□ 0.81
BDNFP23560 AC104076.2-201ENST00000448912 469 ntBASIC20.08■□□□□ 0.81
BDNFP23560 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.08■□□□□ 0.81
BDNFP23560 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.08■□□□□ 0.81
BDNFP23560 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
BDNFP23560 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
BDNFP23560 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
BDNFP23560 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
BDNFP23560 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms