Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL5A1P20908 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL5A1P20908 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
COL5A1P20908 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL5A1P20908 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL5A1P20908 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL5A1P20908 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL5A1P20908 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.33■□□□□ 0.52
COL5A1P20908 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL5A1P20908 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
COL5A1P20908 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
COL5A1P20908 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
COL5A1P20908 PVRIG2P-201ENST00000435460 978 ntBASIC18.33■□□□□ 0.52
COL5A1P20908 TSSC2-201ENST00000450217 709 ntBASIC18.33■□□□□ 0.52
COL5A1P20908 KRT8P26-201ENST00000534154 1276 ntBASIC18.33■□□□□ 0.52
COL5A1P20908 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.33■□□□□ 0.52
COL5A1P20908 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
COL5A1P20908 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.32■□□□□ 0.52
COL5A1P20908 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL5A1P20908 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL5A1P20908 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL5A1P20908 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL5A1P20908 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL5A1P20908 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.32■□□□□ 0.52
COL5A1P20908 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL5A1P20908 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL5A1P20908 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
COL5A1P20908 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL5A1P20908 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL5A1P20908 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL5A1P20908 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC18.32■□□□□ 0.52
COL5A1P20908 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.32■□□□□ 0.52
COL5A1P20908 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC18.32■□□□□ 0.52
COL5A1P20908 MIR3180-5-201ENST00000583743 153 ntBASIC18.32■□□□□ 0.52
COL5A1P20908 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
COL5A1P20908 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL5A1P20908 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL5A1P20908 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL5A1P20908 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.31■□□□□ 0.52
COL5A1P20908 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.31■□□□□ 0.52
COL5A1P20908 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A1P20908 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A1P20908 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A1P20908 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.31■□□□□ 0.52
COL5A1P20908 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A1P20908 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
COL5A1P20908 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A1P20908 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.31■□□□□ 0.52
COL5A1P20908 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
COL5A1P20908 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A1P20908 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.31■□□□□ 0.52
COL5A1P20908 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
COL5A1P20908 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A1P20908 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A1P20908 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A1P20908 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A1P20908 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
COL5A1P20908 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.31■□□□□ 0.52
COL5A1P20908 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A1P20908 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A1P20908 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A1P20908 AL162741.1-201ENST00000565563 1558 ntBASIC18.31■□□□□ 0.52
COL5A1P20908 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A1P20908 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
COL5A1P20908 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL5A1P20908 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL5A1P20908 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.3■□□□□ 0.52
COL5A1P20908 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
COL5A1P20908 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC18.3■□□□□ 0.52
COL5A1P20908 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC18.3■□□□□ 0.52
COL5A1P20908 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
COL5A1P20908 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.3■□□□□ 0.52
COL5A1P20908 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.3■□□□□ 0.52
COL5A1P20908 AL391422.3-201ENST00000603791 2761 ntBASIC18.3■□□□□ 0.52
COL5A1P20908 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL5A1P20908 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL5A1P20908 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.3■□□□□ 0.52
COL5A1P20908 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
COL5A1P20908 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC18.3■□□□□ 0.52
COL5A1P20908 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC18.3■□□□□ 0.52
COL5A1P20908 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.3■□□□□ 0.52
COL5A1P20908 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
COL5A1P20908 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.3■□□□□ 0.52
COL5A1P20908 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
COL5A1P20908 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.3■□□□□ 0.52
COL5A1P20908 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL5A1P20908 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL5A1P20908 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
COL5A1P20908 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.29■□□□□ 0.52
COL5A1P20908 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL5A1P20908 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.29■□□□□ 0.52
COL5A1P20908 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL5A1P20908 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
COL5A1P20908 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.29■□□□□ 0.52
COL5A1P20908 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
COL5A1P20908 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
COL5A1P20908 DRAXINP1-201ENST00000437611 948 ntBASIC18.29■□□□□ 0.52
COL5A1P20908 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC18.29■□□□□ 0.52
COL5A1P20908 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC18.29■□□□□ 0.52
COL5A1P20908 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms