Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.65■□□□□ 0.74
COL9A1P20849 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL9A1P20849 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL9A1P20849 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
COL9A1P20849 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
COL9A1P20849 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL9A1P20849 AL031284.1-201ENST00000419297 478 ntBASIC19.64■□□□□ 0.73
COL9A1P20849 WDR53-203ENST00000429115 683 ntTSL 2 BASIC19.64■□□□□ 0.73
COL9A1P20849 GPX1P2-201ENST00000429271 606 ntBASIC19.64■□□□□ 0.73
COL9A1P20849 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
COL9A1P20849 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.64■□□□□ 0.73
COL9A1P20849 AC138894.3-201ENST00000603787 634 ntBASIC19.64■□□□□ 0.73
COL9A1P20849 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
COL9A1P20849 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL9A1P20849 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL9A1P20849 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.64■□□□□ 0.73
COL9A1P20849 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.64■□□□□ 0.73
COL9A1P20849 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
COL9A1P20849 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.64■□□□□ 0.73
COL9A1P20849 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL9A1P20849 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL9A1P20849 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL9A1P20849 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL9A1P20849 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL9A1P20849 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL9A1P20849 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.63■□□□□ 0.73
COL9A1P20849 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
COL9A1P20849 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
COL9A1P20849 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL9A1P20849 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL9A1P20849 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL9A1P20849 AC093909.1-201ENST00000504731 1122 ntBASIC19.63■□□□□ 0.73
COL9A1P20849 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.63■□□□□ 0.73
COL9A1P20849 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL9A1P20849 RPL18-209ENST00000550645 463 ntTSL 5 BASIC19.63■□□□□ 0.73
COL9A1P20849 RPL18-214ENST00000552588 559 ntTSL 3 BASIC19.63■□□□□ 0.73
COL9A1P20849 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC19.63■□□□□ 0.73
COL9A1P20849 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
COL9A1P20849 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL9A1P20849 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.63■□□□□ 0.73
COL9A1P20849 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL9A1P20849 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL9A1P20849 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL9A1P20849 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL9A1P20849 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL9A1P20849 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL9A1P20849 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL9A1P20849 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
COL9A1P20849 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.62■□□□□ 0.73
COL9A1P20849 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC19.62■□□□□ 0.73
COL9A1P20849 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC19.62■□□□□ 0.73
COL9A1P20849 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.62■□□□□ 0.73
COL9A1P20849 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.62■□□□□ 0.73
COL9A1P20849 NEK4P2-201ENST00000580004 1012 ntBASIC19.62■□□□□ 0.73
COL9A1P20849 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC19.62■□□□□ 0.73
COL9A1P20849 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC19.62■□□□□ 0.73
COL9A1P20849 LINC01465-201ENST00000408887 1940 ntBASIC19.62■□□□□ 0.73
COL9A1P20849 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL9A1P20849 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL9A1P20849 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
COL9A1P20849 AC007375.3-201ENST00000600936 2314 ntBASIC19.62■□□□□ 0.73
COL9A1P20849 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.62■□□□□ 0.73
COL9A1P20849 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.61■□□□□ 0.73
COL9A1P20849 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL9A1P20849 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.61■□□□□ 0.73
COL9A1P20849 AC020907.5-201ENST00000624372 1936 ntBASIC19.61■□□□□ 0.73
COL9A1P20849 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL9A1P20849 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL9A1P20849 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL9A1P20849 AKR1C7P-201ENST00000305623 895 ntBASIC19.61■□□□□ 0.73
COL9A1P20849 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
COL9A1P20849 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.61■□□□□ 0.73
COL9A1P20849 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC19.61■□□□□ 0.73
COL9A1P20849 DRAXINP1-201ENST00000437611 948 ntBASIC19.61■□□□□ 0.73
COL9A1P20849 AP003041.3-201ENST00000527151 707 ntBASIC19.61■□□□□ 0.73
COL9A1P20849 RFPL4AP1-201ENST00000530883 850 ntBASIC19.61■□□□□ 0.73
COL9A1P20849 MIR3687-2-201ENST00000577708 61 ntBASIC19.61■□□□□ 0.73
COL9A1P20849 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.61■□□□□ 0.73
COL9A1P20849 MIR3687-1-201ENST00000614492 61 ntBASIC19.61■□□□□ 0.73
COL9A1P20849 Metazoa_SRP.96-201ENST00000621315 318 ntBASIC19.61■□□□□ 0.73
COL9A1P20849 TP73-AS1-207ENST00000624167 988 ntBASIC19.61■□□□□ 0.73
COL9A1P20849 CAND2-206ENST00000626378 333 ntTSL 5 BASIC19.61■□□□□ 0.73
COL9A1P20849 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
COL9A1P20849 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL9A1P20849 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL9A1P20849 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.61■□□□□ 0.73
COL9A1P20849 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
COL9A1P20849 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
COL9A1P20849 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL9A1P20849 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
COL9A1P20849 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL9A1P20849 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL9A1P20849 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
COL9A1P20849 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC19.6■□□□□ 0.73
COL9A1P20849 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL9A1P20849 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL9A1P20849 KRT18P28-201ENST00000453838 1332 ntBASIC19.6■□□□□ 0.73
COL9A1P20849 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL9A1P20849 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
COL9A1P20849 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms