Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL11A1P12107 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
COL11A1P12107 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC21.71■■□□□ 1.07
COL11A1P12107 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
COL11A1P12107 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL11A1P12107 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
COL11A1P12107 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL11A1P12107 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL11A1P12107 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC21.71■■□□□ 1.07
COL11A1P12107 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC21.71■■□□□ 1.07
COL11A1P12107 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC21.71■■□□□ 1.07
COL11A1P12107 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC21.71■■□□□ 1.07
COL11A1P12107 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC21.71■■□□□ 1.07
COL11A1P12107 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL11A1P12107 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC21.71■■□□□ 1.07
COL11A1P12107 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
COL11A1P12107 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
COL11A1P12107 TREX1-205ENST00000625293 1783 ntBASIC21.71■■□□□ 1.07
COL11A1P12107 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC21.71■■□□□ 1.07
COL11A1P12107 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL11A1P12107 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL11A1P12107 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC21.71■■□□□ 1.07
COL11A1P12107 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC21.71■■□□□ 1.07
COL11A1P12107 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL11A1P12107 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL11A1P12107 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC21.71■■□□□ 1.07
COL11A1P12107 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC21.71■■□□□ 1.07
COL11A1P12107 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC21.71■■□□□ 1.07
COL11A1P12107 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL11A1P12107 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
COL11A1P12107 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
COL11A1P12107 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.07
COL11A1P12107 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL11A1P12107 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL11A1P12107 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL11A1P12107 AC093525.10-201ENST00000625130 1569 ntBASIC21.7■■□□□ 1.06
COL11A1P12107 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL11A1P12107 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
COL11A1P12107 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
COL11A1P12107 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC21.7■■□□□ 1.06
COL11A1P12107 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
COL11A1P12107 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC21.7■■□□□ 1.06
COL11A1P12107 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.7■■□□□ 1.06
COL11A1P12107 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL11A1P12107 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC21.7■■□□□ 1.06
COL11A1P12107 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
COL11A1P12107 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
COL11A1P12107 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL11A1P12107 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL11A1P12107 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL11A1P12107 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL11A1P12107 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL11A1P12107 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL11A1P12107 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL11A1P12107 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL11A1P12107 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC21.69■■□□□ 1.06
COL11A1P12107 TEN1-204ENST00000588202 862 ntTSL 3 BASIC21.69■■□□□ 1.06
COL11A1P12107 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC21.69■■□□□ 1.06
COL11A1P12107 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
COL11A1P12107 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL11A1P12107 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL11A1P12107 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
COL11A1P12107 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC21.69■■□□□ 1.06
COL11A1P12107 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
COL11A1P12107 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL11A1P12107 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
COL11A1P12107 HLA-F-220ENST00000434407 884 ntBASIC21.69■■□□□ 1.06
COL11A1P12107 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC21.69■■□□□ 1.06
COL11A1P12107 AC034232.1-201ENST00000506026 1064 ntBASIC21.69■■□□□ 1.06
COL11A1P12107 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC21.69■■□□□ 1.06
COL11A1P12107 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC21.69■■□□□ 1.06
COL11A1P12107 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
COL11A1P12107 CLEC4GP1-201ENST00000596555 870 ntBASIC21.69■■□□□ 1.06
COL11A1P12107 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL11A1P12107 AL157888.1-201ENST00000631930 593 ntBASIC21.69■■□□□ 1.06
COL11A1P12107 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC21.69■■□□□ 1.06
COL11A1P12107 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL11A1P12107 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL11A1P12107 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL11A1P12107 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC21.68■■□□□ 1.06
COL11A1P12107 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL11A1P12107 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.68■■□□□ 1.06
COL11A1P12107 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL11A1P12107 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL11A1P12107 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL11A1P12107 ATP5G2P1-201ENST00000433580 426 ntBASIC21.68■■□□□ 1.06
COL11A1P12107 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC21.68■■□□□ 1.06
COL11A1P12107 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC21.68■■□□□ 1.06
COL11A1P12107 MIR3180-1-201ENST00000580374 94 ntBASIC21.68■■□□□ 1.06
COL11A1P12107 MIR3180-3-201ENST00000584616 94 ntBASIC21.68■■□□□ 1.06
COL11A1P12107 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC21.68■■□□□ 1.06
COL11A1P12107 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL11A1P12107 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL11A1P12107 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC21.67■■□□□ 1.06
COL11A1P12107 KATNBL1P6-202ENST00000562413 1466 ntBASIC21.67■■□□□ 1.06
COL11A1P12107 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL11A1P12107 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC21.67■■□□□ 1.06
COL11A1P12107 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL11A1P12107 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL11A1P12107 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms