Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC14.8□□□□□ -0.04
CXCL1P09341 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL1P09341 AL162727.3-201ENST00000635661 2787 ntBASIC14.8□□□□□ -0.04
CXCL1P09341 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL1P09341 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL1P09341 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL1P09341 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC14.8□□□□□ -0.04
CXCL1P09341 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL1P09341 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL1P09341 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL1P09341 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL1P09341 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL1P09341 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
CXCL1P09341 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
CXCL1P09341 SERP1-208ENST00000491660 830 ntTSL 2 BASIC14.8□□□□□ -0.04
CXCL1P09341 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL1P09341 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL1P09341 AP001330.3-201ENST00000520123 633 ntBASIC14.8□□□□□ -0.04
CXCL1P09341 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC14.8□□□□□ -0.04
CXCL1P09341 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC14.8□□□□□ -0.04
CXCL1P09341 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC14.8□□□□□ -0.04
CXCL1P09341 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC14.8□□□□□ -0.04
CXCL1P09341 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC14.8□□□□□ -0.04
CXCL1P09341 AC243732.1-201ENST00000612648 864 ntBASIC14.8□□□□□ -0.04
CXCL1P09341 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL1P09341 AL355001.2-201ENST00000620617 1191 ntBASIC14.8□□□□□ -0.04
CXCL1P09341 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
CXCL1P09341 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL1P09341 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL1P09341 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL1P09341 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
CXCL1P09341 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL1P09341 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC14.8□□□□□ -0.04
CXCL1P09341 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CXCL1P09341 TEX21P-204ENST00000641479 1693 ntBASIC14.8□□□□□ -0.04
CXCL1P09341 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
CXCL1P09341 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
CXCL1P09341 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL1P09341 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC14.8□□□□□ -0.04
CXCL1P09341 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC14.8□□□□□ -0.04
CXCL1P09341 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC14.8□□□□□ -0.04
CXCL1P09341 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CXCL1P09341 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL1P09341 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL1P09341 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL1P09341 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL1P09341 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
CXCL1P09341 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
CXCL1P09341 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL1P09341 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL1P09341 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC14.79□□□□□ -0.04
CXCL1P09341 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL1P09341 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL1P09341 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL1P09341 EBPL-204ENST00000378272 766 ntTSL 3 BASIC14.79□□□□□ -0.04
CXCL1P09341 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC14.79□□□□□ -0.04
CXCL1P09341 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL1P09341 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
CXCL1P09341 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC14.79□□□□□ -0.04
CXCL1P09341 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL1P09341 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC14.79□□□□□ -0.04
CXCL1P09341 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL1P09341 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CXCL1P09341 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
CXCL1P09341 GRAMD4P4-201ENST00000613563 1115 ntBASIC14.79□□□□□ -0.04
CXCL1P09341 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
CXCL1P09341 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
CXCL1P09341 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
CXCL1P09341 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC14.78□□□□□ -0.04
CXCL1P09341 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL1P09341 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL1P09341 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL1P09341 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL1P09341 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL1P09341 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL1P09341 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC14.78□□□□□ -0.04
CXCL1P09341 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC14.78□□□□□ -0.04
CXCL1P09341 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL1P09341 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
CXCL1P09341 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL1P09341 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL1P09341 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL1P09341 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL1P09341 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC14.78□□□□□ -0.04
CXCL1P09341 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL1P09341 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC14.78□□□□□ -0.04
CXCL1P09341 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL1P09341 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL1P09341 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL1P09341 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL1P09341 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL1P09341 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
CXCL1P09341 SAPCD2P1-201ENST00000395413 1184 ntBASIC14.78□□□□□ -0.04
CXCL1P09341 AC007322.3-201ENST00000426526 701 ntBASIC14.78□□□□□ -0.04
CXCL1P09341 AC091305.1-201ENST00000479476 895 ntBASIC14.78□□□□□ -0.04
CXCL1P09341 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC14.78□□□□□ -0.04
CXCL1P09341 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC14.78□□□□□ -0.04
CXCL1P09341 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
CXCL1P09341 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC14.78□□□□□ -0.04
CXCL1P09341 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms