Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 AC005837.3-201ENST00000612163 286 ntBASIC14.35□□□□□ -0.11
HLA-DQA1P01909 AL136967.2-201ENST00000623968 743 ntBASIC14.35□□□□□ -0.11
HLA-DQA1P01909 AC105233.4-201ENST00000642045 216 ntBASIC14.35□□□□□ -0.11
HLA-DQA1P01909 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 HYI-206ENST00000372434 1025 ntTSL 5 BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 AL031432.3-201ENST00000607698 485 ntBASIC14.34□□□□□ -0.11
HLA-DQA1P01909 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 IRX1P1-201ENST00000438849 1838 ntBASIC14.34□□□□□ -0.11
HLA-DQA1P01909 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
HLA-DQA1P01909 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HLA-DQA1P01909 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC14.33□□□□□ -0.11
HLA-DQA1P01909 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HLA-DQA1P01909 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HLA-DQA1P01909 KRT8P17-201ENST00000453110 1448 ntBASIC14.33□□□□□ -0.11
HLA-DQA1P01909 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
HLA-DQA1P01909 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HLA-DQA1P01909 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
HLA-DQA1P01909 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HLA-DQA1P01909 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC14.33□□□□□ -0.11
HLA-DQA1P01909 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
HLA-DQA1P01909 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
HLA-DQA1P01909 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HLA-DQA1P01909 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
HLA-DQA1P01909 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 CROCCP1-201ENST00000426910 5675 ntBASIC14.33□□□□□ -0.12
HLA-DQA1P01909 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 PGM5P4-201ENST00000421970 445 ntBASIC14.33□□□□□ -0.12
HLA-DQA1P01909 AC105265.2-201ENST00000467189 838 ntBASIC14.33□□□□□ -0.12
HLA-DQA1P01909 STOX2-205ENST00000513034 807 ntTSL 3 BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC14.33□□□□□ -0.12
HLA-DQA1P01909 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms