Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 PODN-203ENST00000395871 2744 ntTSL 5 BASIC15.36■□□□□ 0.05
HMGB3O15347 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGB3O15347 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGB3O15347 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
HMGB3O15347 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB3O15347 AC012313.1-201ENST00000593393 3059 ntBASIC15.35■□□□□ 0.05
HMGB3O15347 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
HMGB3O15347 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC15.35■□□□□ 0.05
HMGB3O15347 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB3O15347 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB3O15347 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB3O15347 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB3O15347 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB3O15347 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB3O15347 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC15.35■□□□□ 0.05
HMGB3O15347 MTURN-203ENST00000409688 843 ntTSL 2 BASIC15.35■□□□□ 0.05
HMGB3O15347 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB3O15347 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB3O15347 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC15.35■□□□□ 0.05
HMGB3O15347 AL358852.1-201ENST00000623174 1268 ntBASIC15.35■□□□□ 0.05
HMGB3O15347 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.35■□□□□ 0.05
HMGB3O15347 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB3O15347 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
HMGB3O15347 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB3O15347 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB3O15347 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB3O15347 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
HMGB3O15347 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB3O15347 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
HMGB3O15347 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
HMGB3O15347 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB3O15347 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB3O15347 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB3O15347 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB3O15347 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
HMGB3O15347 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
HMGB3O15347 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC15.35■□□□□ 0.05
HMGB3O15347 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB3O15347 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB3O15347 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC15.34■□□□□ 0.05
HMGB3O15347 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB3O15347 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC15.34■□□□□ 0.05
HMGB3O15347 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
HMGB3O15347 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC15.34■□□□□ 0.05
HMGB3O15347 AC106820.2-201ENST00000563775 3264 ntBASIC15.34■□□□□ 0.05
HMGB3O15347 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB3O15347 AC090164.3-201ENST00000610780 2143 ntBASIC15.34■□□□□ 0.05
HMGB3O15347 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB3O15347 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
HMGB3O15347 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB3O15347 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB3O15347 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB3O15347 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
HMGB3O15347 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB3O15347 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC15.34■□□□□ 0.05
HMGB3O15347 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB3O15347 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC15.34■□□□□ 0.05
HMGB3O15347 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB3O15347 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
HMGB3O15347 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB3O15347 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC15.34■□□□□ 0.05
HMGB3O15347 DUX4L2-201ENST00000561772 1275 ntBASIC15.34■□□□□ 0.05
HMGB3O15347 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB3O15347 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC15.34■□□□□ 0.05
HMGB3O15347 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC15.34■□□□□ 0.05
HMGB3O15347 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC15.34■□□□□ 0.05
HMGB3O15347 DUX4L6-201ENST00000626483 1275 ntBASIC15.34■□□□□ 0.05
HMGB3O15347 DUX4L1-201ENST00000627662 1275 ntBASIC15.34■□□□□ 0.05
HMGB3O15347 DUX4L8-201ENST00000629013 1275 ntBASIC15.34■□□□□ 0.05
HMGB3O15347 DUX4L3-201ENST00000630187 1275 ntBASIC15.34■□□□□ 0.05
HMGB3O15347 DUX4L7-201ENST00000630678 1275 ntBASIC15.34■□□□□ 0.05
HMGB3O15347 DUX4L5-201ENST00000630834 1275 ntBASIC15.34■□□□□ 0.05
HMGB3O15347 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
HMGB3O15347 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
HMGB3O15347 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
HMGB3O15347 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB3O15347 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB3O15347 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC15.34■□□□□ 0.05
HMGB3O15347 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.34■□□□□ 0.05
HMGB3O15347 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB3O15347 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
HMGB3O15347 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB3O15347 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB3O15347 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB3O15347 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC15.34■□□□□ 0.05
HMGB3O15347 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HMGB3O15347 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
HMGB3O15347 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HMGB3O15347 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.05
HMGB3O15347 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HMGB3O15347 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HMGB3O15347 AP001271.2-201ENST00000624018 1556 ntBASIC15.33■□□□□ 0.05
HMGB3O15347 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC15.33■□□□□ 0.05
HMGB3O15347 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HMGB3O15347 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
HMGB3O15347 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HMGB3O15347 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC15.33■□□□□ 0.04
HMGB3O15347 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC15.33■□□□□ 0.04
HMGB3O15347 AC104187.1-201ENST00000607510 612 ntBASIC15.33■□□□□ 0.04
HMGB3O15347 MIR6084-201ENST00000622012 110 ntBASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms