Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1AO00555 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CACNA1AO00555 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CACNA1AO00555 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18■□□□□ 0.47
CACNA1AO00555 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC18■□□□□ 0.47
CACNA1AO00555 AC023274.1-201ENST00000418278 595 ntBASIC18■□□□□ 0.47
CACNA1AO00555 MCCD1P2-201ENST00000423228 335 ntBASIC18■□□□□ 0.47
CACNA1AO00555 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC18■□□□□ 0.47
CACNA1AO00555 AL359881.2-201ENST00000602973 570 ntBASIC18■□□□□ 0.47
CACNA1AO00555 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC18■□□□□ 0.47
CACNA1AO00555 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC18■□□□□ 0.47
CACNA1AO00555 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18■□□□□ 0.47
CACNA1AO00555 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CACNA1AO00555 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC18■□□□□ 0.47
CACNA1AO00555 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18■□□□□ 0.47
CACNA1AO00555 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CACNA1AO00555 HIST2H3DP1-201ENST00000401004 416 ntBASIC18■□□□□ 0.47
CACNA1AO00555 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
CACNA1AO00555 SNHG9-202ENST00000564014 471 ntBASIC18■□□□□ 0.47
CACNA1AO00555 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CACNA1AO00555 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18■□□□□ 0.47
CACNA1AO00555 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18■□□□□ 0.47
CACNA1AO00555 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CACNA1AO00555 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CACNA1AO00555 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CACNA1AO00555 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CACNA1AO00555 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CACNA1AO00555 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.99■□□□□ 0.47
CACNA1AO00555 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.99■□□□□ 0.47
CACNA1AO00555 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CACNA1AO00555 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
CACNA1AO00555 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.99■□□□□ 0.47
CACNA1AO00555 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC17.99■□□□□ 0.47
CACNA1AO00555 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.99■□□□□ 0.47
CACNA1AO00555 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.99■□□□□ 0.47
CACNA1AO00555 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.99■□□□□ 0.47
CACNA1AO00555 AC114341.1-201ENST00000618070 349 ntBASIC17.99■□□□□ 0.47
CACNA1AO00555 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CACNA1AO00555 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CACNA1AO00555 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CACNA1AO00555 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC17.99■□□□□ 0.47
CACNA1AO00555 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.99■□□□□ 0.47
CACNA1AO00555 ELK2BP-201ENST00000415014 1224 ntBASIC17.99■□□□□ 0.47
CACNA1AO00555 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC17.99■□□□□ 0.47
CACNA1AO00555 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CACNA1AO00555 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CACNA1AO00555 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CACNA1AO00555 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.98■□□□□ 0.47
CACNA1AO00555 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC17.98■□□□□ 0.47
CACNA1AO00555 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CACNA1AO00555 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.98■□□□□ 0.47
CACNA1AO00555 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CACNA1AO00555 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CACNA1AO00555 FGFR3P6-201ENST00000457012 610 ntBASIC17.98■□□□□ 0.47
CACNA1AO00555 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CACNA1AO00555 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.98■□□□□ 0.47
CACNA1AO00555 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CACNA1AO00555 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.98■□□□□ 0.47
CACNA1AO00555 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.98■□□□□ 0.47
CACNA1AO00555 AC138761.1-201ENST00000584393 385 ntBASIC17.98■□□□□ 0.47
CACNA1AO00555 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.98■□□□□ 0.47
CACNA1AO00555 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC17.98■□□□□ 0.47
CACNA1AO00555 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CACNA1AO00555 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.98■□□□□ 0.47
CACNA1AO00555 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CACNA1AO00555 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CACNA1AO00555 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CACNA1AO00555 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
CACNA1AO00555 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CACNA1AO00555 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.98■□□□□ 0.47
CACNA1AO00555 POM121L3P-201ENST00000419331 1163 ntBASIC17.98■□□□□ 0.47
CACNA1AO00555 AC092474.2-201ENST00000424288 719 ntBASIC17.98■□□□□ 0.47
CACNA1AO00555 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC17.98■□□□□ 0.47
CACNA1AO00555 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CACNA1AO00555 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CACNA1AO00555 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.98■□□□□ 0.47
CACNA1AO00555 AP001269.4-201ENST00000609611 512 ntBASIC17.98■□□□□ 0.47
CACNA1AO00555 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.98■□□□□ 0.47
CACNA1AO00555 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CACNA1AO00555 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CACNA1AO00555 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CACNA1AO00555 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
CACNA1AO00555 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.97■□□□□ 0.47
CACNA1AO00555 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CACNA1AO00555 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CACNA1AO00555 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CACNA1AO00555 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC17.97■□□□□ 0.47
CACNA1AO00555 RNA5SP416-201ENST00000516838 111 ntBASIC17.97■□□□□ 0.47
CACNA1AO00555 AP002472.1-201ENST00000577490 586 ntBASIC17.97■□□□□ 0.47
CACNA1AO00555 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CACNA1AO00555 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CACNA1AO00555 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CACNA1AO00555 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.97■□□□□ 0.47
CACNA1AO00555 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC17.97■□□□□ 0.47
CACNA1AO00555 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17.97■□□□□ 0.47
CACNA1AO00555 MINOS1P3-201ENST00000457048 203 ntBASIC17.97■□□□□ 0.47
CACNA1AO00555 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.97■□□□□ 0.47
CACNA1AO00555 AL121603.2-201ENST00000557373 2117 ntBASIC17.97■□□□□ 0.47
CACNA1AO00555 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC17.97■□□□□ 0.47
CACNA1AO00555 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms