Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC17.76■□□□□ 0.43
HMGN4O00479 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGN4O00479 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC17.76■□□□□ 0.43
HMGN4O00479 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC17.76■□□□□ 0.43
HMGN4O00479 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
HMGN4O00479 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HMGN4O00479 AC124016.1-201ENST00000609552 612 ntBASIC17.76■□□□□ 0.43
HMGN4O00479 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
HMGN4O00479 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGN4O00479 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGN4O00479 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGN4O00479 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGN4O00479 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
HMGN4O00479 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
HMGN4O00479 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HMGN4O00479 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGN4O00479 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGN4O00479 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGN4O00479 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGN4O00479 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGN4O00479 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.75■□□□□ 0.43
HMGN4O00479 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGN4O00479 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGN4O00479 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HMGN4O00479 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGN4O00479 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
HMGN4O00479 AC133681.1-201ENST00000465482 601 ntBASIC17.75■□□□□ 0.43
HMGN4O00479 ADM-205ENST00000528544 586 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGN4O00479 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGN4O00479 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC17.75■□□□□ 0.43
HMGN4O00479 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC17.75■□□□□ 0.43
HMGN4O00479 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGN4O00479 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGN4O00479 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGN4O00479 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.75■□□□□ 0.43
HMGN4O00479 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.75■□□□□ 0.43
HMGN4O00479 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGN4O00479 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
HMGN4O00479 AC104581.1-202ENST00000635932 2618 ntBASIC17.75■□□□□ 0.43
HMGN4O00479 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
HMGN4O00479 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.75■□□□□ 0.43
HMGN4O00479 WIZP1-201ENST00000531444 2299 ntBASIC17.74■□□□□ 0.43
HMGN4O00479 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.74■□□□□ 0.43
HMGN4O00479 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGN4O00479 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.74■□□□□ 0.43
HMGN4O00479 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGN4O00479 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGN4O00479 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGN4O00479 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGN4O00479 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HMGN4O00479 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.74■□□□□ 0.43
HMGN4O00479 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC17.74■□□□□ 0.43
HMGN4O00479 Z85996.1-201ENST00000494644 937 ntBASIC17.74■□□□□ 0.43
HMGN4O00479 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC17.74■□□□□ 0.43
HMGN4O00479 RN7SL471P-201ENST00000580476 299 ntBASIC17.74■□□□□ 0.43
HMGN4O00479 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
HMGN4O00479 AC083906.6-201ENST00000641366 219 ntBASIC17.74■□□□□ 0.43
HMGN4O00479 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
HMGN4O00479 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGN4O00479 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGN4O00479 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
HMGN4O00479 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.74■□□□□ 0.43
HMGN4O00479 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.74■□□□□ 0.43
HMGN4O00479 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
HMGN4O00479 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
HMGN4O00479 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.74■□□□□ 0.43
HMGN4O00479 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
HMGN4O00479 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGN4O00479 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
HMGN4O00479 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HMGN4O00479 AC009113.1-201ENST00000570267 2443 ntBASIC17.73■□□□□ 0.43
HMGN4O00479 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HMGN4O00479 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.73■□□□□ 0.43
HMGN4O00479 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGN4O00479 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.73■□□□□ 0.43
HMGN4O00479 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HMGN4O00479 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGN4O00479 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HMGN4O00479 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGN4O00479 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HMGN4O00479 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC17.73■□□□□ 0.43
HMGN4O00479 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
HMGN4O00479 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC17.73■□□□□ 0.43
HMGN4O00479 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.73■□□□□ 0.43
HMGN4O00479 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC17.73■□□□□ 0.43
HMGN4O00479 AC110285.5-201ENST00000611501 352 ntBASIC17.73■□□□□ 0.43
HMGN4O00479 AC073648.6-201ENST00000641589 218 ntBASIC17.73■□□□□ 0.43
HMGN4O00479 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGN4O00479 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.73■□□□□ 0.43
HMGN4O00479 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGN4O00479 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
HMGN4O00479 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGN4O00479 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGN4O00479 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
HMGN4O00479 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
HMGN4O00479 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HMGN4O00479 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HMGN4O00479 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HMGN4O00479 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
HMGN4O00479 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms