Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 MTURN-203ENST00000409688 843 ntTSL 2 BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 GAS2L1P2-201ENST00000436355 1356 ntBASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
TRAV1-1A0A0B4J248 TNRC18P3-201ENST00000441896 2691 ntBASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 ANKRD18DP-204ENST00000455355 1975 ntBASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 AC024257.2-201ENST00000549699 147 ntBASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
TRAV1-1A0A0B4J248 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 UNC93B3-201ENST00000308076 687 ntBASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
TRAV1-1A0A0B4J248 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms