Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC058791.1-201ENST00000608412 3198 ntBASIC4.5□□□□□ -1.69
HMGB1P09429 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
HMGB1P09429 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.49□□□□□ -1.69
HMGB1P09429 RNU5E-5P-201ENST00000365379 116 ntBASIC4.49□□□□□ -1.69
HMGB1P09429 RNA5SP283-201ENST00000365604 119 ntBASIC4.49□□□□□ -1.69
HMGB1P09429 AL031577.2-201ENST00000404133 280 ntBASIC4.49□□□□□ -1.69
HMGB1P09429 AL021407.1-201ENST00000404531 386 ntBASIC4.49□□□□□ -1.69
HMGB1P09429 RNU4-72P-201ENST00000410754 173 ntBASIC4.49□□□□□ -1.69
HMGB1P09429 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC4.49□□□□□ -1.69
HMGB1P09429 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC4.49□□□□□ -1.69
HMGB1P09429 MED14P1-201ENST00000430517 648 ntBASIC4.49□□□□□ -1.69
HMGB1P09429 UBE2D3P4-201ENST00000441973 436 ntBASIC4.49□□□□□ -1.69
HMGB1P09429 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.49□□□□□ -1.69
HMGB1P09429 MTCO3P20-201ENST00000454926 688 ntBASIC4.49□□□□□ -1.69
HMGB1P09429 RPS3AP43-201ENST00000479743 781 ntBASIC4.49□□□□□ -1.69
HMGB1P09429 RN7SL432P-201ENST00000484057 298 ntBASIC4.49□□□□□ -1.69
HMGB1P09429 RAC1P2-201ENST00000511164 579 ntBASIC4.49□□□□□ -1.69
HMGB1P09429 RNA5SP143-201ENST00000516936 115 ntBASIC4.49□□□□□ -1.69
HMGB1P09429 OR8R1P-201ENST00000543943 764 ntBASIC4.49□□□□□ -1.69
HMGB1P09429 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC4.49□□□□□ -1.69
HMGB1P09429 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC4.49□□□□□ -1.69
HMGB1P09429 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.49□□□□□ -1.69
HMGB1P09429 AC006960.3-201ENST00000561845 705 ntBASIC4.49□□□□□ -1.69
HMGB1P09429 AL157394.1-201ENST00000562983 1224 ntBASIC4.49□□□□□ -1.69
HMGB1P09429 ROCK1P1-201ENST00000573767 549 ntBASIC4.49□□□□□ -1.69
HMGB1P09429 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.49□□□□□ -1.69
HMGB1P09429 AC006557.5-201ENST00000603126 811 ntBASIC4.49□□□□□ -1.69
HMGB1P09429 BRDTP1-201ENST00000605735 677 ntBASIC4.49□□□□□ -1.69
HMGB1P09429 SNORA62.6-201ENST00000606322 83 ntBASIC4.49□□□□□ -1.69
HMGB1P09429 AC019176.2-201ENST00000611579 315 ntBASIC4.49□□□□□ -1.69
HMGB1P09429 AC007494.3-201ENST00000624660 743 ntBASIC4.49□□□□□ -1.69
HMGB1P09429 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
HMGB1P09429 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC4.49□□□□□ -1.69
HMGB1P09429 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.49□□□□□ -1.69
HMGB1P09429 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
HMGB1P09429 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
HMGB1P09429 MRPL42P2-201ENST00000403169 426 ntBASIC4.48□□□□□ -1.69
HMGB1P09429 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
HMGB1P09429 RNU6-628P-201ENST00000410675 107 ntBASIC4.48□□□□□ -1.69
HMGB1P09429 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC4.48□□□□□ -1.69
HMGB1P09429 ZNF90P2-204ENST00000419323 1075 ntBASIC4.48□□□□□ -1.69
HMGB1P09429 AL358075.3-201ENST00000426289 226 ntBASIC4.48□□□□□ -1.69
HMGB1P09429 AL451062.2-201ENST00000427515 271 ntBASIC4.48□□□□□ -1.69
HMGB1P09429 AC093106.2-201ENST00000428212 385 ntBASIC4.48□□□□□ -1.69
HMGB1P09429 AC005300.1-201ENST00000428401 373 ntBASIC4.48□□□□□ -1.69
HMGB1P09429 AC104332.2-201ENST00000429959 156 ntBASIC4.48□□□□□ -1.69
HMGB1P09429 AC092641.1-201ENST00000440229 772 ntBASIC4.48□□□□□ -1.69
HMGB1P09429 AC093156.1-201ENST00000440382 670 ntBASIC4.48□□□□□ -1.69
HMGB1P09429 UBBP3-201ENST00000445497 241 ntBASIC4.48□□□□□ -1.69
HMGB1P09429 PRDX3P3-201ENST00000447765 522 ntBASIC4.48□□□□□ -1.69
HMGB1P09429 USP9YP12-201ENST00000450481 570 ntBASIC4.48□□□□□ -1.69
HMGB1P09429 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC4.48□□□□□ -1.69
HMGB1P09429 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.48□□□□□ -1.69
HMGB1P09429 RN7SL323P-201ENST00000494712 295 ntBASIC4.48□□□□□ -1.69
HMGB1P09429 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC4.48□□□□□ -1.69
HMGB1P09429 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC4.48□□□□□ -1.69
HMGB1P09429 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC4.48□□□□□ -1.69
HMGB1P09429 SUB1P1-201ENST00000524415 382 ntBASIC4.48□□□□□ -1.69
HMGB1P09429 MIR4286-201ENST00000580651 93 ntBASIC4.48□□□□□ -1.69
HMGB1P09429 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.48□□□□□ -1.69
HMGB1P09429 AC083760.1-201ENST00000589621 670 ntBASIC4.48□□□□□ -1.69
HMGB1P09429 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
HMGB1P09429 AL022161.1-201ENST00000604390 213 ntBASIC4.48□□□□□ -1.69
HMGB1P09429 AC013562.2-201ENST00000611632 603 ntBASIC4.48□□□□□ -1.69
HMGB1P09429 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
HMGB1P09429 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC4.48□□□□□ -1.69
HMGB1P09429 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC4.48□□□□□ -1.69
HMGB1P09429 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC4.48□□□□□ -1.69
HMGB1P09429 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
HMGB1P09429 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
HMGB1P09429 AL049781.1-201ENST00000623195 3585 ntBASIC4.48□□□□□ -1.69
HMGB1P09429 FTX-214ENST00000638437 12267 ntTSL 5 BASIC4.48□□□□□ -1.69
HMGB1P09429 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC4.47□□□□□ -1.69
HMGB1P09429 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
HMGB1P09429 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
HMGB1P09429 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
HMGB1P09429 RNA5SP424-201ENST00000390988 115 ntBASIC4.47□□□□□ -1.69
HMGB1P09429 SNORD115.1-201ENST00000391109 76 ntBASIC4.47□□□□□ -1.69
HMGB1P09429 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC4.47□□□□□ -1.69
HMGB1P09429 Y_RNA.608-201ENST00000410647 95 ntBASIC4.47□□□□□ -1.69
HMGB1P09429 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.47□□□□□ -1.69
HMGB1P09429 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC4.47□□□□□ -1.69
HMGB1P09429 AC119618.1-201ENST00000434191 222 ntBASIC4.47□□□□□ -1.69
HMGB1P09429 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC4.47□□□□□ -1.69
HMGB1P09429 SETD6P1-201ENST00000444575 317 ntBASIC4.47□□□□□ -1.69
HMGB1P09429 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC4.47□□□□□ -1.69
HMGB1P09429 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC4.47□□□□□ -1.69
HMGB1P09429 MTND1P22-201ENST00000510572 951 ntBASIC4.47□□□□□ -1.69
HMGB1P09429 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC4.47□□□□□ -1.69
HMGB1P09429 SNORA31.3-201ENST00000516029 96 ntBASIC4.47□□□□□ -1.69
HMGB1P09429 RNU6-352P-201ENST00000516908 107 ntBASIC4.47□□□□□ -1.69
HMGB1P09429 NARSP2-201ENST00000518524 679 ntBASIC4.47□□□□□ -1.69
HMGB1P09429 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.47□□□□□ -1.69
HMGB1P09429 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC4.47□□□□□ -1.69
HMGB1P09429 H3F3AP1-201ENST00000559984 334 ntBASIC4.47□□□□□ -1.69
HMGB1P09429 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC4.47□□□□□ -1.69
HMGB1P09429 NIFKP6-201ENST00000598115 845 ntBASIC4.47□□□□□ -1.69
HMGB1P09429 AC007363.1-201ENST00000604736 620 ntBASIC4.47□□□□□ -1.69
HMGB1P09429 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.47□□□□□ -1.69
HMGB1P09429 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 135.9 ms