Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC19.04■□□□□ 0.64
USH1CQ9Y6N9 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
USH1CQ9Y6N9 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.03■□□□□ 0.64
USH1CQ9Y6N9 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USH1CQ9Y6N9 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.03■□□□□ 0.64
USH1CQ9Y6N9 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
USH1CQ9Y6N9 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.03■□□□□ 0.64
USH1CQ9Y6N9 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USH1CQ9Y6N9 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
USH1CQ9Y6N9 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
USH1CQ9Y6N9 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USH1CQ9Y6N9 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
USH1CQ9Y6N9 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
USH1CQ9Y6N9 RARRES2P4-201ENST00000514074 484 ntBASIC19.03■□□□□ 0.64
USH1CQ9Y6N9 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
USH1CQ9Y6N9 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.03■□□□□ 0.64
USH1CQ9Y6N9 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USH1CQ9Y6N9 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USH1CQ9Y6N9 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USH1CQ9Y6N9 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USH1CQ9Y6N9 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USH1CQ9Y6N9 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.03■□□□□ 0.64
USH1CQ9Y6N9 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USH1CQ9Y6N9 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USH1CQ9Y6N9 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USH1CQ9Y6N9 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
USH1CQ9Y6N9 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
USH1CQ9Y6N9 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.03■□□□□ 0.64
USH1CQ9Y6N9 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
USH1CQ9Y6N9 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USH1CQ9Y6N9 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
USH1CQ9Y6N9 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
USH1CQ9Y6N9 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.02■□□□□ 0.64
USH1CQ9Y6N9 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USH1CQ9Y6N9 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
USH1CQ9Y6N9 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
USH1CQ9Y6N9 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
USH1CQ9Y6N9 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
USH1CQ9Y6N9 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
USH1CQ9Y6N9 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.02■□□□□ 0.64
USH1CQ9Y6N9 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
USH1CQ9Y6N9 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USH1CQ9Y6N9 AC023632.3-201ENST00000521633 145 ntBASIC19.02■□□□□ 0.64
USH1CQ9Y6N9 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
USH1CQ9Y6N9 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
USH1CQ9Y6N9 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USH1CQ9Y6N9 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.02■□□□□ 0.64
USH1CQ9Y6N9 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC19.02■□□□□ 0.64
USH1CQ9Y6N9 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
USH1CQ9Y6N9 AC067852.2-201ENST00000590513 2313 ntBASIC19.02■□□□□ 0.64
USH1CQ9Y6N9 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.63
USH1CQ9Y6N9 ABALON-201ENST00000629058 1903 ntBASIC19.02■□□□□ 0.63
USH1CQ9Y6N9 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
USH1CQ9Y6N9 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
USH1CQ9Y6N9 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
USH1CQ9Y6N9 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
USH1CQ9Y6N9 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC19.01■□□□□ 0.63
USH1CQ9Y6N9 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USH1CQ9Y6N9 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
USH1CQ9Y6N9 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USH1CQ9Y6N9 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USH1CQ9Y6N9 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.01■□□□□ 0.63
USH1CQ9Y6N9 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.01■□□□□ 0.63
USH1CQ9Y6N9 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC19.01■□□□□ 0.63
USH1CQ9Y6N9 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.01■□□□□ 0.63
USH1CQ9Y6N9 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
USH1CQ9Y6N9 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
USH1CQ9Y6N9 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
USH1CQ9Y6N9 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USH1CQ9Y6N9 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USH1CQ9Y6N9 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
USH1CQ9Y6N9 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.01■□□□□ 0.63
USH1CQ9Y6N9 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USH1CQ9Y6N9 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USH1CQ9Y6N9 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
USH1CQ9Y6N9 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.01■□□□□ 0.63
USH1CQ9Y6N9 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USH1CQ9Y6N9 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USH1CQ9Y6N9 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USH1CQ9Y6N9 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USH1CQ9Y6N9 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19■□□□□ 0.63
USH1CQ9Y6N9 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USH1CQ9Y6N9 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USH1CQ9Y6N9 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USH1CQ9Y6N9 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19■□□□□ 0.63
USH1CQ9Y6N9 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC19■□□□□ 0.63
USH1CQ9Y6N9 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC19■□□□□ 0.63
USH1CQ9Y6N9 OR6D1P-202ENST00000641007 5290 ntBASIC19■□□□□ 0.63
USH1CQ9Y6N9 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19■□□□□ 0.63
USH1CQ9Y6N9 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19■□□□□ 0.63
USH1CQ9Y6N9 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
USH1CQ9Y6N9 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19■□□□□ 0.63
USH1CQ9Y6N9 AC018553.1-201ENST00000616682 1458 ntBASIC19■□□□□ 0.63
USH1CQ9Y6N9 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USH1CQ9Y6N9 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19■□□□□ 0.63
USH1CQ9Y6N9 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19■□□□□ 0.63
USH1CQ9Y6N9 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USH1CQ9Y6N9 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms